PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01070.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 270aa MW: 29187.9 Da PI: 7.3441

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01070.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.9	1.4e-14	22	73	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg++ t e+Aa+a++ a+ k++g Zmw_sc01070.1.g00200.1.sm.mk 22 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEDAAEAYDVAAIKFRG 73 57**************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.2E-10	22	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.15E-18	22	82	IPR016177	DNA-binding domain
CDD	cd00018	3.37E-24	22	83	No hit	No description
PROSITE profile	PS51032	18.927	23	81	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-33	23	87	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-18	23	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.9E-5	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.9E-5	63	83	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MTRFEYVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTYSTQEDA 60 AEAYDVAAIK FRGVNAVTNF DITRYDVEKI MESNVLLPGE EARKVKAIVP AMPHNSGWEL 120 NPTGEACTEW RMVVLGSHQE TVAYAEADVL QNGIMGRGGD PNPSMHGVVG LDVECQAQPD 180 LDGSGCRTTG GVSFSNSSTL VISLGNSREG IPAERLGLAM LYNKHPNAAV SLGTISPWTQ 240 MQAPVTASHM LKPPSAAVSH LPVFAGWADA

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318293.1	1e-112	AP2-like ethylene-responsive transcription factor ANT isoform X1
Refseq	XP_021318295.1	1e-112	AP2-like ethylene-responsive transcription factor ANT isoform X2
Swissprot	Q84Z02	9e-68	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A0A9LT82	1e-121	A0A0A9LT82_ARUDO; Uncharacterized protein
STRING	Sb01g042090.1	1e-112	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP948	38	133

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]