PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01065.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 403aa MW: 42551.7 Da PI: 8.2425

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01065.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	8.9e-33	212	269	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers dp vv++tYeg+H+h+ Zmw_sc01065.1.g00200.1.am.mkhc 212 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPVKKRVERSYLDPAVVITTYEGKHTHP 269 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-34	196	271	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-29	203	271	IPR003657	WRKY domain
PROSITE profile	PS50811	32.294	206	271	IPR003657	WRKY domain
SMART	SM00774	6.4E-39	211	270	IPR003657	WRKY domain
Pfam	PF03106	5.4E-26	212	269	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSSPGEYLYY HDELASLFAQ PTSDTMQQRQ EASCFPDFLL AGPPTATRFQ QLQSPTSDVM 60 QHLLAGMPMG DYDPLFGALD LPVAAADVVV KRELVVDTTS GGGSRTPSTA PVTPNATSSM 120 SSSSSEAAGG GRGGFGAGGF GAAKEDSPAG RCKKEEGDGE DSNVSGKGDQ EDGDKCKRGA 180 GSAAKAKGKG GEKRQRQPQF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ 240 RCPVKKRVER SYLDPAVVIT TYEGKHTHPI PAALRGSTHL LAAQAAHGLH HHQFGSLVPM 300 PHTMGAAAPF GRTGGGGGID MLGLLQPRGA SHRAMLPTTM THASSHGLAA GPVSSSVAMS 360 AATTTTSSAP SPSSLQMQHM MAQDFGFLQD MMMPSFVHSN VQP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSSPGEYLYY HDELASLFAQ PTSDTMQQRQ EASCFPDFLL AGPPTATRFQ QLQSPTSDVM  60
QHLLAGMPMG DYDPLFGALD LPVAAADVVV KRELVVDTTS GGGSRTPSTA PVTPNATSSM  120
SSSSSEAAGG GRGGFGAGGF GAAKEDSPAG RCKKEEGDGE DSNVSGKGDQ EDGDKCKRGA  180
GSAAKAKGKG GEKRQRQPQF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ  240
RCPVKKRVER SYLDPAVVIT TYEGKHTHPI PAALRGSTHL LAAQAAHGLH HHQFGSLVPM  300
PHTMGAAAPF GRTGGGGGID MLGLLQPRGA SHRAMLPTTM THASSHGLAA GPVSSSVAMS  360
AATTTTSSAP SPSSLQMQHM MAQDFGFLQD MMMPSFVHSN VQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	202	272	8	78	Probable WRKY transcription factor 4
2lex_A	4e-28	202	272	8	78	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001169830.1	1e-108	uncharacterized protein LOC100383722
TrEMBL	C0PIJ7	1e-107	C0PIJ7_MAIZE; Putative WRKY transcription factor 71
STRING	GRMZM2G151763_P01	1e-108	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173