PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01063.1.g00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 579aa MW: 61765.7 Da PI: 4.8012 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 110.2 | 1.4e-34 | 86 | 185 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg+ + Zmw_sc01063.1.g00220.1.am.mk 86 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMHRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRDSGDAF 166 79************************99877778***************************************8999**** PP DUF573 79 sfskehdqkifelskkiWg 97 sf+++h+q ife+++ iW+ Zmw_sc01063.1.g00220.1.am.mk 167 SFRSPHEQAIFEIARNIWR 185 ******************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-30 | 87 | 184 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 579 aa Download sequence Send to blast |
MSPTGDDPSA TAAAAAPGGT SFPDADGGGD SEDGDFPHAH LLDPSEPGLP DPASSSAAVL 60 PHAVPAGGSG SGGPVTSGNG SERRPLFQRL WTEEDEIVIL RGFAEFTAAR GTAFASHQYD 120 TDPFYEDMHR RLQLDFSKSQ LVEKLRRLKR KYRNCVSRLR DSGDAFSFRS PHEQAIFEIA 180 RNIWRPANKH GRDPAADSDD EDAVASAAAT AVPGSTSPNG KVMSPSSGRQ RRRRRATEAG 240 PAPAPAMNMV QPPQPVQLPV SVPVKMDDSP ALTQTPMPVM VTMDGSEPLR LPAMSPQSGV 300 PDAEKNCLIP LLKDMISAVI NVGVNPFGAK LPELPLGLPM EGEKWRKQRI LELEVYLKRI 360 ELLQDQLPGI ARDVGPGALD RPYGIVMDPC VAMGMSATVR HGGVEARGAD VLLAGALLRL 420 HEARGVVNAN DEVASDLGDQ GAAVAGLLSA EEALDPGDHL VRGRVGGHVE VYDTVAKVLS 480 ERVLERRVAG GEGSLVASAD VELVVVPEEE QPGSGVERQY KGLGLDEVPI SLLLGELQWV 540 SGSDCCFLRL ALLLLGFGLR DEGRDGAVWT TEGWWRRVY |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461092.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A1E5UXC0 | 0.0 | A0A1E5UXC0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03462.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |