PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01051.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 1051aa MW: 111816 Da PI: 10.1455

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01051.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.3	2.2e-19	835	885	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ ++ a+ +l+g Zmw_sc01051.1.g00160.1.am.mk 835 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRG 885 69******.******88.....55***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.89E-28	835	892	No hit	No description
Pfam	PF00847	6.8E-12	835	885	IPR001471	AP2/ERF domain
SMART	SM00380	9.0E-34	836	899	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.196	836	893	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.9E-29	836	893	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-21	836	893	IPR016177	DNA-binding domain
PRINTS	PR00367	1.9E-9	837	848	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-9	859	875	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1051 aa Download sequence Send to blast
MVNTTTTECG LLVAEASTDW STVTVVETST TRRVLATMVE ASTNRKVLVM DVTENSTNRK 60 DEHYHAVNYS ACVQAWMESS LLLLHAAFRE WASKRQHEQG KDRGGGTEAG GSTRFVKAGC 120 CTDEQCHPYG LSSKLYTPTV HARGRRAKPL AAGCSACESE GACRTASCPN RQNFLSSDVS 180 PDPAHVYGVD GHRARDLPRR AHTGCSRAGK IHRCAVPSPS RGWQEEPAGR RYGDLTVPAG 240 RYRARMHATG ARRRSSYAPA GCPSERGEIS TGPVQALSTQ RRSDAGAPPD ALTGRLGGGA 300 LLPSGAFAPD RPPSRAAPPP SSRAPMAARG GGGATTRHVT IGSAPPCPTV GTPPMDGQRP 360 SFPHEWSVVR GRRERTAPSI RWHYAAVKRP MRRGAQSERD LRCAHAKSSE DCATSQKVRA 420 GSSLTHARPS ISAATCPDYC SHADTVPAKR APGLHTPQGR AGWWSLRPPL RRSPQWLNKT 480 TARGHRGIGR GRQPRLVGDP IRRVDSGNHS PTFVFRSPQK TYPNPQNHPI EPVAHQSPAS 540 TPHVAARLPS VLRSQGLLLV FLHATQLLPP RFGGSVSCSS RSLRSISFRS DSSWYRSKYC 600 SRRHLSPRSE SCFSQSSKTV KVPAGGAAAA AAAPAVAASV RTRQRRGRAR LYCLPFVSLL 660 LCSSCSRSPA AFLFSFLKKV NRSSLLRPLL RSPAALACSP APLASLLPSF GLYSPADPQS 720 RTEGIHPSIT SLLVLAMSRS RTVRIFWDDP DVTDSSGDED AYGARKVGRL VRELPRVEAA 780 AAAAAAAAAG GMLEQSSAGD GERGRRPAAG GLGGCSGGAR RRLGSKGAGS VAPGTKFRGV 840 RRRPWGKYAA EIRDPWRGVR VWLGTFDTAE EAARVYDSAA IQLRGPNATT NFSSAAAADS 900 GGSGGGHQDQ VTAGYESGTE SSPAVSSPTS VLRKVPSLSS LAEDKDESDA ATGEPAAEGS 960 LAALEELGEF VPFEDAPVYA SSSGFWDFEP DAAGFLYAEP SSPETAWDVA AATTSASSGD 1020 ASWPAPSVHQ ENDYFQDLRD LFPLNPLPAI F

Sequence ? help Back to Top

Protein Sequence Length: 1051 aa Download sequence Send to blast

MVNTTTTECG LLVAEASTDW STVTVVETST TRRVLATMVE ASTNRKVLVM DVTENSTNRK  60
DEHYHAVNYS ACVQAWMESS LLLLHAAFRE WASKRQHEQG KDRGGGTEAG GSTRFVKAGC  120
CTDEQCHPYG LSSKLYTPTV HARGRRAKPL AAGCSACESE GACRTASCPN RQNFLSSDVS  180
PDPAHVYGVD GHRARDLPRR AHTGCSRAGK IHRCAVPSPS RGWQEEPAGR RYGDLTVPAG  240
RYRARMHATG ARRRSSYAPA GCPSERGEIS TGPVQALSTQ RRSDAGAPPD ALTGRLGGGA  300
LLPSGAFAPD RPPSRAAPPP SSRAPMAARG GGGATTRHVT IGSAPPCPTV GTPPMDGQRP  360
SFPHEWSVVR GRRERTAPSI RWHYAAVKRP MRRGAQSERD LRCAHAKSSE DCATSQKVRA  420
GSSLTHARPS ISAATCPDYC SHADTVPAKR APGLHTPQGR AGWWSLRPPL RRSPQWLNKT  480
TARGHRGIGR GRQPRLVGDP IRRVDSGNHS PTFVFRSPQK TYPNPQNHPI EPVAHQSPAS  540
TPHVAARLPS VLRSQGLLLV FLHATQLLPP RFGGSVSCSS RSLRSISFRS DSSWYRSKYC  600
SRRHLSPRSE SCFSQSSKTV KVPAGGAAAA AAAPAVAASV RTRQRRGRAR LYCLPFVSLL  660
LCSSCSRSPA AFLFSFLKKV NRSSLLRPLL RSPAALACSP APLASLLPSF GLYSPADPQS  720
RTEGIHPSIT SLLVLAMSRS RTVRIFWDDP DVTDSSGDED AYGARKVGRL VRELPRVEAA  780
AAAAAAAAAG GMLEQSSAGD GERGRRPAAG GLGGCSGGAR RRLGSKGAGS VAPGTKFRGV  840
RRRPWGKYAA EIRDPWRGVR VWLGTFDTAE EAARVYDSAA IQLRGPNATT NFSSAAAADS  900
GGSGGGHQDQ VTAGYESGTE SSPAVSSPTS VLRKVPSLSS LAEDKDESDA ATGEPAAEGS  960
LAALEELGEF VPFEDAPVYA SSSGFWDFEP DAAGFLYAEP SSPETAWDVA AATTSASSGD  1020
ASWPAPSVHQ ENDYFQDLRD LFPLNPLPAI F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-20	827	892	5	71	Ethylene-responsive transcription factor ERF096

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	386	392	VKRPMRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1690	36	97