PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc01044.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 491aa MW: 52600.6 Da PI: 9.6647

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01044.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-5	121	150	No hit	No description
PROSITE profile	PS50157	10.741	124	151	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	126	146	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MAFHGMRSRA RASHPNQQAS ARRIRSCRTA SRPAAALEVF ELESQSPTTK ARASTHACGV 60 CAQHHGDRER AGAVCRTVEP ARDVGKRKGL DPVVHEQKHT PRRQNQSFPS PCYALGGAWP 120 PRSYTCAFCR REFKSAPALG GHMNVHRRDR AKMRGHHGAA GQKLVGAAPA TGDTPTHAAA 180 PTGYAVLDPI LSSSATGTVL TPSGDVLLST RLALAPAHDV SDEDDDKEVD LELRLGPTSR 240 LDLRRNTTAS EQPARRISEA VELAAAASTE DRPWPWRCRQ LHCLHVSVLP HLVCRPEVSG 300 GGRTGVTQNG AEMHGTATYV CTSWAMSRFA PLCAAAFACV VVSPSTCCSV RRRTAVVSVL 360 IGTAARACRT APTPNRAARV VSRAMHYWRC KQAGTEQDGP PCRARLGSGA CSTSTSNGAA 420 CNKVAFFVIR QRVNLVDPVV FHALFANGKV SDTSTRSIER QLEDTYCLLG TSIVPERHPG 480 PPSGTGNDVV P

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MAFHGMRSRA RASHPNQQAS ARRIRSCRTA SRPAAALEVF ELESQSPTTK ARASTHACGV  60
CAQHHGDRER AGAVCRTVEP ARDVGKRKGL DPVVHEQKHT PRRQNQSFPS PCYALGGAWP  120
PRSYTCAFCR REFKSAPALG GHMNVHRRDR AKMRGHHGAA GQKLVGAAPA TGDTPTHAAA  180
PTGYAVLDPI LSSSATGTVL TPSGDVLLST RLALAPAHDV SDEDDDKEVD LELRLGPTSR  240
LDLRRNTTAS EQPARRISEA VELAAAASTE DRPWPWRCRQ LHCLHVSVLP HLVCRPEVSG  300
GGRTGVTQNG AEMHGTATYV CTSWAMSRFA PLCAAAFACV VVSPSTCCSV RRRTAVVSVL  360
IGTAARACRT APTPNRAARV VSRAMHYWRC KQAGTEQDGP PCRARLGSGA CSTSTSNGAA  420
CNKVAFFVIR QRVNLVDPVV FHALFANGKV SDTSTRSIER QLEDTYCLLG TSIVPERHPG  480
PPSGTGNDVV P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	5e-11	119	146	2	29	superman protein
2l1o_A	5e-11	119	146	2	29	Transcriptional regulator SUPERMAN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11852	26	33