PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01043.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 542aa MW: 58257.5 Da PI: 8.5407 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.7e-18 | 394 | 482 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffkv+ p+ +++ l +p +f e ++ ++ + ++l+ +sg sW+v l + +s++ v+t+GWkeF++++ L g f++ Zmw_sc01043.1.g00070.1.am.mk 394 FFKVFFPEQSGEG--LKIPSPFHEYVEEAPN--RVVSLRGPSGHSWRVVL--TTGSQGLVFTQGWKEFARDHSLIPGHFLL 468 8999988887765..9******954465544..48***************..***************************** PP EEE-SSSEE..EEEEE CS B3 82 Fkldgrsefelvvkvf 97 F++dg sef v vf Zmw_sc01043.1.g00070.1.am.mk 469 FTYDGCSEF--SVAVF 482 ***986776..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 392 | 483 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-19 | 393 | 483 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-16 | 394 | 482 | No hit | No description |
Pfam | PF02362 | 7.6E-15 | 394 | 480 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-13 | 394 | 488 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 407 | 485 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MTRTPPRITV ASGASEAGQE ASPEPNEAGC RGQAWGRTVG GRVLSQGGKR EAPTRHTRSC 60 LYSPSPPTLP CTSAVHPPAL PRCGPSLRLC PRLPPPPRLP AEPLPHLVLG PPSRCRLPRR 120 LHNQLRCCRK VAFWAPDGRA RRAVEGGGSP ALTSDEAVAA VDQFEAKVAA AARGWGRGVR 180 EVRQCRAQIE EEGRGDGRGG GADPLGADES VSRAVGWRWE VEVRSRARKG CGAGIATARG 240 TAVCPCSPTH PAKEVERQSV SHYRGSEMVA CPALPAGASE SVGGDSEVSQ NSEFRCSVTR 300 GEDALVAVTR RPEIRAPAGV RQPEIETEGH TKQQGSSSAA AATAVMRNGM GKEKEKQVEK 360 GRDRRKEKQS GKEQRKEIAR EVQDDVPVAA GEQFFKVFFP EQSGEGLKIP SPFHEYVEEA 420 PNRVVSLRGP SGHSWRVVLT TGSQGLVFTQ GWKEFARDHS LIPGHFLLFT YDGCSEFSVA 480 VFTPLGVEDK AALKVQPCKE LLVKQEEEEG TVDVAADGTL EASDTPFLEG NGATTGKRAR 540 YW |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |