PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01038.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 593aa MW: 63657.6 Da PI: 9.7467

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01038.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	420	467	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + sk Ka +L + ++Y++sLq Zmw_sc01038.1.g00060.1.am.mk 420 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 467 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-16	414	483	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.83E-11	414	471	No hit	No description
PROSITE profile	PS50888	15.523	416	466	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	416	484	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	420	467	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	422	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSD RHYVHATIWS LLPRAPNATT 60 IMWLSEAPNA DRFSVAVGWV SRAQSFEWTV QEGDASWVVS AIKIRTYRTW GVERPSKARP 120 LTPHLDAHFP PPPSSRRQAR THALARAHTY PARSSRTRPG HQPPASRPRL WQRSAMAHDG 180 FPGAFNELPW PLTQAAAASL QAQLPYPLSG AEWEHDAAMI SLVPSPASTV GGAGVHEAVL 240 MEHLASRLGV SMPSPPLPSP SSRYGSCYST PVGSPSKPVN AAANVGFAER AARLPCFTAS 300 NGKLSRVASS QSLLAEQTSS PRGVAPAHGS SSDGPNRKRK AAAGGKSKAK DTMTTATAKS 360 PEAERRAKKS KLSADVGDDD QPRPAAGEAG HGNDKGKELV AESPKDYIHV RARRGQATDS 420 HSLAERVRRE KISERMKLLQ DIVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV 480 NPRLEVDVDS FVQKDANQSC VPAPTSLPQP PPPPVYSTEG SNTAFCYTSS PAPAVPSPVT 540 ANAKSFEPSS LVSHGSIQDH SLEGFENSNP HQIASPWVDD LQSLVQMGFR GNT

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSD RHYVHATIWS LLPRAPNATT  60
IMWLSEAPNA DRFSVAVGWV SRAQSFEWTV QEGDASWVVS AIKIRTYRTW GVERPSKARP  120
LTPHLDAHFP PPPSSRRQAR THALARAHTY PARSSRTRPG HQPPASRPRL WQRSAMAHDG  180
FPGAFNELPW PLTQAAAASL QAQLPYPLSG AEWEHDAAMI SLVPSPASTV GGAGVHEAVL  240
MEHLASRLGV SMPSPPLPSP SSRYGSCYST PVGSPSKPVN AAANVGFAER AARLPCFTAS  300
NGKLSRVASS QSLLAEQTSS PRGVAPAHGS SSDGPNRKRK AAAGGKSKAK DTMTTATAKS  360
PEAERRAKKS KLSADVGDDD QPRPAAGEAG HGNDKGKELV AESPKDYIHV RARRGQATDS  420
HSLAERVRRE KISERMKLLQ DIVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV  480
NPRLEVDVDS FVQKDANQSC VPAPTSLPQP PPPPVYSTEG SNTAFCYTSS PAPAVPSPVT  540
ANAKSFEPSS LVSHGSIQDH SLEGFENSNP HQIASPWVDD LQSLVQMGFR GNT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703449.1	1e-149	transcription factor bHLH62
TrEMBL	A0A3L6Q2U4	1e-157	A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRING	Pavir.Ha00788.1.p	1e-149	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13313	25	32