PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 312aa MW: 33273.8 Da PI: 4.0709

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01029.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.9e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Zmw_sc01029.1.g00130.1.am.mk 16 RGLWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63 788***************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-23	7	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.184	11	67	IPR017930	Myb domain
SMART	SM00717	4.7E-12	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	16	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.08E-22	18	90	IPR009057	Homeodomain-like
CDD	cd00167	1.47E-10	19	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-7	67	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGRGRAPCCD KVGLNRGLWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTVDEEETI IKLHGLLGNK EQPKAGSTKE DGAAPITSSS ASSSTSTANS 120 SGDVGEQCGT SQEPDAIPPP LETDIDISGM LVDAFPAMAA PMPPQSSPCS SSTLTTSSTC 180 VGGGGVEDLI ELPVIDIELD IWDIIDGAAD VPDVWGAGHG DATVPCTGAT VSTSEAGEGE 240 ASDWWLENLE RELGLCGPPE DSRAQSDLLL ADTEGDPVSN YFQNGPAIAE LSDRLPLCYD 300 QRDESSAFDQ EW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-13	14	90	25	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814304.1	1e-113	myb-related protein Zm1-like
Swissprot	P20024	1e-104	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A2S3GS79	1e-111	A0A2S3GS79_9POAL; Uncharacterized protein
STRING	Pavir.Aa01159.1.p	1e-105	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]