PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01024.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 360aa    MW: 37459 Da    PI: 8.9906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01024.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32192248258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                   +Dgy+WrKYGqK vk+s+fprsY+rCt ++C+vkk+vers++dp+vv++tYeg+H h
  Zmw_sc01024.1.g00110.1.am.mk 192 EDGYRWRKYGQKAVKNSPFPRSYFRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCH 248
                                   8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-33176249IPR003657WRKY domain
SuperFamilySSF1182909.15E-28183249IPR003657WRKY domain
PROSITE profilePS5081129.207186251IPR003657WRKY domain
SMARTSM007743.4E-38191250IPR003657WRKY domain
PfamPF031061.4E-25192248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAGAAGYGPQ GAGEDWPFAG AVDAFADYSS VLAELGWPGG LAADLSVLDL PEATRLAPEL  60
ARPEEIVAAP GMSGDAAGAS SSSSGDGPGH GAARGNGGQK PADEAVWALR GSGACRVDRL  120
SRRDLRMGRA SPCSSDALFS LIRMSSAASA SSGVVGLWRV AVKPAAPAKK GPKRVRQPRF  180
AFMTKSEIDH LEDGYRWRKY GQKAVKNSPF PRSYFRCTNS KCTVKKRVER SSDDPSVVIT  240
TYEGQHCHYT AAAAAFQSGA GPASAHRIHS AAAAVALAEQ MPFVAAAQRR LSPFHPQSSP  300
PSCSETAVDV TAALTSSLQQ YLSGSERVSM PSTPSSVAQA PASVEKGLLD DIVPHGVRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25181248774Probable WRKY transcription factor 4
2lex_A3e-25181248774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559239.11e-69probable WRKY transcription factor 48
RefseqXP_010229633.11e-69probable WRKY transcription factor 48
RefseqXP_010229639.11e-69probable WRKY transcription factor 48
SwissprotQ9C9836e-53WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLF2E2C84e-79F2E2C8_HORVV; Predicted protein
STRINGPavir.J37837.1.p6e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]