PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01021.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 450aa MW: 48021.7 Da PI: 8.8351

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01021.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	197	220	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ r+ +L+ H+ + H Zmw_sc01021.1.g00220.1.sm.mk 197 FPCKVCGEVLGRPQQLELHQAMkH 220 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.767	197	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	199	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.3E-10	222	436	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.1E-7	223	437	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MAAVGGSRSS LLRGFLSLFF LLFVHIGHAS CCFSPGPAAR QREDDDSTET GADGIVGARG 60 ASKRRKISPL AFSPAASSSA VAEERVRRRN VSSLATSLRV YLHRIFSTGT KNGAVAAREE 120 EEAVTTTVSS PQAQSLVPQP SASLVLSTPS SPCSSSSFTS PISSRSLGVT PVPSSLQKLL 180 QAGRQSSRSF AALGDVFPCK VCGEVLGRPQ QLELHQAMKH SLSELSDLDS SMNIIRMIFL 240 AGWKPAGDAP AVRRVLRIHH HPRALARFEE YRDLVRARAA RRCAEGAAVE ERCIADGNER 300 LRFHCSTMLC PSLGSAGGAC GSPYCCVCST LRHGFAGKQA DVDGVATYAS AWAAHVSLPE 360 DVEREFAFLQ VRRAMLVCRV VAGLVGRGAA DDKVAYDSIV PVRARGVGVG GDDDDAELLV 420 FNPRAVLPCF VIIYSSQQSV ATRRPACKQY

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MAAVGGSRSS LLRGFLSLFF LLFVHIGHAS CCFSPGPAAR QREDDDSTET GADGIVGARG  60
ASKRRKISPL AFSPAASSSA VAEERVRRRN VSSLATSLRV YLHRIFSTGT KNGAVAAREE  120
EEAVTTTVSS PQAQSLVPQP SASLVLSTPS SPCSSSSFTS PISSRSLGVT PVPSSLQKLL  180
QAGRQSSRSF AALGDVFPCK VCGEVLGRPQ QLELHQAMKH SLSELSDLDS SMNIIRMIFL  240
AGWKPAGDAP AVRRVLRIHH HPRALARFEE YRDLVRARAA RRCAEGAAVE ERCIADGNER  300
LRFHCSTMLC PSLGSAGGAC GSPYCCVCST LRHGFAGKQA DVDGVATYAS AWAAHVSLPE  360
DVEREFAFLQ VRRAMLVCRV VAGLVGRGAA DDKVAYDSIV PVRARGVGVG GDDDDAELLV  420
FNPRAVLPCF VIIYSSQQSV ATRRPACKQY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021313429.1	0.0	uncharacterized protein LOC8054291
TrEMBL	A0A0A9L721	0.0	A0A0A9L721_ARUDO; Uncharacterized protein
STRING	Sb01g040170.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10517	30	37