PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01021.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 731aa MW: 78161 Da PI: 6.6802

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01021.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	169.4	2.8e-52	364	698	2	373
GRAS 2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknsseel 78 +lL+++Aea+s +++ + +++++ + ++++m+Rlaa+ft AL+ l +s + ++ ++++++++++ ++l Zmw_sc01021.1.g00100.1.am.mk 364 LHLLMAAAEALSGPHKSwELARMVSHTG-STNAAASNMERLAAHFTDALQGLLDGSHPVGAAGRqaaAAQQQQHHHTGDVL 443 799******99776633334444433.34556689*************9766544333111444444455999 PP GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskee 157 +a++l++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G a+ sRp +pp+lRiT+++++ g +++ Zmw_sc01021.1.g00100.1.am.mk 444 TAFQLLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDIAEG--------AMISRPdgVPPPHLRITALSRSGGGGSRA 516 ******************************************........6889767799*******7777 PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 ++e+g+rLa fA+++g pf+f++ + r+ +gE l+ n+vl+ ++++ + +v+ +v + + + Zmw_sc01021.1.g00100.1.am.mk 517 VQEVGRRLAAFAASIGQPFSFRA-----------ATVRMVKGEILVANCVLNQAAAT---TTIRRSTGSVVTVVEEDQGDA 583 ******************9...........3557789******655554...555555667777777777777 PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 e+ d ++ F++rf+e l+ ysa s+ r vEr++l+++i +++ + ++ e ++ W+e Zmw_sc01021.1.g00100.1.am.mk 584 EKEDEESGDAAAGGFVTRFMEELHRYSA------------SRVRGLVERVILAPNIAGALSRAYRAVDGVDEAKGGWSE-- 650 66666667777779********97............688******************************96.. PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373 pv ls ++ +qa+lll ++ dgy++ee s + +vlgWk ++L+s+S+W Zmw_sc01021.1.g00100.1.am.mk 651 ------PVVLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKAQRLLSASVW 698 ......999*************.**88626777************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.437	337	687	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.9E-50	364	698	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MTFAHQPHGP HQAAMDSAAL FCDPDHRNDC VPPRRVDHPA TTAGRCRRPA RALADHPDKR 60 TKLSPQLTLF CDPDHRNDCV PPRRVDHPAT TAGRCRRPAR ALADHPDKRT KLSPQLSQLT 120 PSALQLTTTY VLGRPVQAAD GDCDGSVRPA GAFCCLLVAE RTHVANVGQA RPHSPLALPL 180 RELAMHRTEP HVSSGPTRSL LPPHRSIPPV PYAPKHFRVP NQSRVTTHKY EDGTQPSAMD 240 VTMDDVAGEL EFSGCSSTTS SSPSFSLDAG TVMYCAWNGL APVADWAPFC SDDGGQDLHG 300 LIESMLCDDT LDDHAGLHPA MFRDEACCYS NGSGPSSTTT TNPGTPVHDV DAQGDCPEKG 360 LRLLHLLMAA AEALSGPHKS WELARMVSHT GSTNAAASNM ERLAAHFTDA LQGLLDGSHP 420 VGAAGRQAAA AQQQQHHHTG DVLTAFQLLQ DMSPYMKFGH FTANQAILEA VAGDRRVHIV 480 DYDIAEGAMI SRPDGVPPPH LRITALSRSG GGGSRAVQEV GRRLAAFAAS IGQPFSFRAA 540 TVRMVKGEIL VANCVLNQAA ATTTIRRSTG SVVTVVEEDQ GDAEKEDEES GDAAAGGFVT 600 RFMEELHRYS ASRVRGLVER VILAPNIAGA LSRAYRAVDG VDEAKGGWSE PVVLSCFNHS 660 QARLLLGLFN DGYTMEETSP NKIVLGWKAQ RLLSASVWAP PPMSVPPSPP EGVLQSVGMA 720 PVSVEPAYAI V

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MTFAHQPHGP HQAAMDSAAL FCDPDHRNDC VPPRRVDHPA TTAGRCRRPA RALADHPDKR  60
TKLSPQLTLF CDPDHRNDCV PPRRVDHPAT TAGRCRRPAR ALADHPDKRT KLSPQLSQLT  120
PSALQLTTTY VLGRPVQAAD GDCDGSVRPA GAFCCLLVAE RTHVANVGQA RPHSPLALPL  180
RELAMHRTEP HVSSGPTRSL LPPHRSIPPV PYAPKHFRVP NQSRVTTHKY EDGTQPSAMD  240
VTMDDVAGEL EFSGCSSTTS SSPSFSLDAG TVMYCAWNGL APVADWAPFC SDDGGQDLHG  300
LIESMLCDDT LDDHAGLHPA MFRDEACCYS NGSGPSSTTT TNPGTPVHDV DAQGDCPEKG  360
LRLLHLLMAA AEALSGPHKS WELARMVSHT GSTNAAASNM ERLAAHFTDA LQGLLDGSHP  420
VGAAGRQAAA AQQQQHHHTG DVLTAFQLLQ DMSPYMKFGH FTANQAILEA VAGDRRVHIV  480
DYDIAEGAMI SRPDGVPPPH LRITALSRSG GGGSRAVQEV GRRLAAFAAS IGQPFSFRAA  540
TVRMVKGEIL VANCVLNQAA ATTTIRRSTG SVVTVVEEDQ GDAEKEDEES GDAAAGGFVT  600
RFMEELHRYS ASRVRGLVER VILAPNIAGA LSRAYRAVDG VDEAKGGWSE PVVLSCFNHS  660
QARLLLGLFN DGYTMEETSP NKIVLGWKAQ RLLSASVWAP PPMSVPPSPP EGVLQSVGMA  720
PVSVEPAYAI V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-31	398	700	54	380	Protein SCARECROW
5b3h_A	2e-31	398	700	53	379	Protein SCARECROW
5b3h_D	2e-31	398	700	53	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468140.2	0.0	nodulation-signaling pathway 2 protein
TrEMBL	A0A1E5V841	0.0	A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRING	Sb01g040270.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7580	31	48