PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01004.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 439aa MW: 46320.9 Da PI: 8.4111

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01004.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	112	171	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zmw_sc01004.1.g00150.1.am.mk 112 PDKVLPCPRCNSMDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 171 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	109	169	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	113	170	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	116	170	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	118	154	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MGECRGGGGG GDCLIKLFGK TIPVPEAGDA KVRWFRLSSA LLDPDLQHSS GSSIDSDANK 60 ENANQDTSDP PPQPEVVDAE DPKSSSSPPE PRQPSGGADD EASNHKEKLK KPDKVLPCPR 120 CNSMDTKFCY FNNYNVSQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKNKN AVAASHFLQR 180 VRAAVPVGGD PLKTNGTVLS FGAHGAAPAL DLAEQVVGHL KEKMLVPVGN AGNHQSVVDP 240 CSDVSSTRDA KNLSVNGVQH PANMNGGATM WPYGCAPPSQ AYYPSGIAIP IYPAAPGYWG 300 CMVPGGWSPL PWPLQPPTQG LSSPTSTAPS VSSGAGHSLT LGKHAREGDE GRSHGSGKVW 360 APKTIRIGDA DEVAKSSIWS LIGIKGDKQN TDTDGRKNGT VFEPKHEAKS AKQAMITSSP 420 LLHANPVALT RSLTFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MGECRGGGGG GDCLIKLFGK TIPVPEAGDA KVRWFRLSSA LLDPDLQHSS GSSIDSDANK  60
ENANQDTSDP PPQPEVVDAE DPKSSSSPPE PRQPSGGADD EASNHKEKLK KPDKVLPCPR  120
CNSMDTKFCY FNNYNVSQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKNKN AVAASHFLQR  180
VRAAVPVGGD PLKTNGTVLS FGAHGAAPAL DLAEQVVGHL KEKMLVPVGN AGNHQSVVDP  240
CSDVSSTRDA KNLSVNGVQH PANMNGGATM WPYGCAPPSQ AYYPSGIAIP IYPAAPGYWG  300
CMVPGGWSPL PWPLQPPTQG LSSPTSTAPS VSSGAGHSLT LGKHAREGDE GRSHGSGKVW  360
APKTIRIGDA DEVAKSSIWS LIGIKGDKQN TDTDGRKNGT VFEPKHEAKS AKQAMITSSP  420
LLHANPVALT RSLTFQEGS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	0.0	cyclic dof factor 1
TrEMBL	K4AA81	0.0	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93