PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01002.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 906aa MW: 97838.6 Da PI: 10.4758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01002.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	357	379	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+++F++ L H r+H Zmw_sc01002.1.g00050.1.am.mk 357 YECPHCHRVFPSGQALGGHKRSH 379 99******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.743	105	132	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.081	105	127	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.19E-7	106	127	No hit	No description
Pfam	PF13912	0.072	107	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.4E-8	292	316	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	292	312	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.19E-7	352	379	No hit	No description
PROSITE profile	PS50157	10.118	357	379	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.5E-12	357	379	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0077	357	379	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	359	379	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MDRLITDHTE RSMLVYTDTP FLPYSALQVV DDDVSVHNCD AKPRPQWQAP RRPGPAMEGT 60 SRWWRWLLPL SLALAPPFSL LTIFAPAESS ARAPRAPSTL AMTKNTCKLC FRRFASPRAM 120 AGHMRSHSVA APAASAAAVA AATAAAARQP ISSASSASIS FTTADEDVGF RKPSSTYTLR 180 ENPKRSLRGA VRSSSDRESE AESTPPRAKR ASPRAARGEQ EPLSSLSEAD TPEEDVALSL 240 MKLSRDSWPS AAPMETDCSD DESDDGYAPP TPPSPPRRPA PAPPVAEKRM QFQCVACKKV 300 FRSYQALGGH RASNVRGGRG GCCAPPVNAP PLPQPHAPSP LPEQHGEEGV DAKQQPYECP 360 HCHRVFPSGQ ALGGHKRSHV CGAAAAAAEQ AVPASTPPSP IKNPGMIDLN VEPPSEEVEL 420 SAVSDPHFNT VSPKPSPATM SSSSSTAAAT PVLFCFVSPL AFPLFACAPR RQQQPAAPAC 480 AAPSTAAMSS VSCRDPACLL GILACFLLFA ASGHHMLYVD QTGIRCASTV SSIRVRLRRV 540 PRRRNIGRHS SRRETARGPP TIFRAGAWSP LGPAPASTWR ASRAFYLSEA GPGASWTCSG 600 LSGSYAEVLF YPPHQSPWLP YPRKPARRAA RGGSRGRNGW RTRVRAWSVH MTGGSVRRQV 660 GRTRRGGDGG ESEGWRVTWS PDPDWTGDTQ LGIRAPFPVS RPVAVVERRS SRRSGRYASP 720 AQPVTNLRSF LFPIGSNQRR SAGTEQVPCF DLVASSRSHE SRGIMPSCVR ARGPIEIGVA 780 SFRRVREQES TGLYTVAAPS PWPCARPHTW LVASLANRPS REGVRAALQT LATTLLLDVS 840 LHFGHHWNGW PANLLSRWST RTAGGNTRHF YQAAQSPAGR PHWKCAYPYS TSTSMLHFAC 900 LGRTCW

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MDRLITDHTE RSMLVYTDTP FLPYSALQVV DDDVSVHNCD AKPRPQWQAP RRPGPAMEGT  60
SRWWRWLLPL SLALAPPFSL LTIFAPAESS ARAPRAPSTL AMTKNTCKLC FRRFASPRAM  120
AGHMRSHSVA APAASAAAVA AATAAAARQP ISSASSASIS FTTADEDVGF RKPSSTYTLR  180
ENPKRSLRGA VRSSSDRESE AESTPPRAKR ASPRAARGEQ EPLSSLSEAD TPEEDVALSL  240
MKLSRDSWPS AAPMETDCSD DESDDGYAPP TPPSPPRRPA PAPPVAEKRM QFQCVACKKV  300
FRSYQALGGH RASNVRGGRG GCCAPPVNAP PLPQPHAPSP LPEQHGEEGV DAKQQPYECP  360
HCHRVFPSGQ ALGGHKRSHV CGAAAAAAEQ AVPASTPPSP IKNPGMIDLN VEPPSEEVEL  420
SAVSDPHFNT VSPKPSPATM SSSSSTAAAT PVLFCFVSPL AFPLFACAPR RQQQPAAPAC  480
AAPSTAAMSS VSCRDPACLL GILACFLLFA ASGHHMLYVD QTGIRCASTV SSIRVRLRRV  540
PRRRNIGRHS SRRETARGPP TIFRAGAWSP LGPAPASTWR ASRAFYLSEA GPGASWTCSG  600
LSGSYAEVLF YPPHQSPWLP YPRKPARRAA RGGSRGRNGW RTRVRAWSVH MTGGSVRRQV  660
GRTRRGGDGG ESEGWRVTWS PDPDWTGDTQ LGIRAPFPVS RPVAVVERRS SRRSGRYASP  720
AQPVTNLRSF LFPIGSNQRR SAGTEQVPCF DLVASSRSHE SRGIMPSCVR ARGPIEIGVA  780
SFRRVREQES TGLYTVAAPS PWPCARPHTW LVASLANRPS REGVRAALQT LATTLLLDVS  840
LHFGHHWNGW PANLLSRWST RTAGGNTRHF YQAAQSPAGR PHWKCAYPYS TSTSMLHFAC  900
LGRTCW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77