PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 385aa MW: 42015.6 Da PI: 7.7267

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00998.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.8e-40	162	240	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Zmw_sc00998.1.g00230.1.am.mk 162 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVItAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 240 6****************************99835679***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.7E-34	157	225	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.274	160	238	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.49E-37	161	241	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.3E-31	163	237	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MMNIPAAGNS CDEFPYVSPS PPPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNAAA 60 AHQTTIAGHG AHDILQFYPA ASSHYLAGGG NPYGHHFGGS AYQSYYQQAA QAAAPEYYFP 120 TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR 180 RHKVCEHHSK APVVITAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP 240 SDADAADKKR AQANKAAASK DKAGSSSRNN MDTGDGLTTQ ILGSALFSKE QDQGMDLGEV 300 VKEAVDPKGK ASMQQQHANH HGMNHHGFPF PTSSGSCFPQ SQAVASDNTS NIAQLQEPSL 360 AFHQHHQQSN ILQLGQAMFD MDFDH

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MMNIPAAGNS CDEFPYVSPS PPPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNAAA  60
AHQTTIAGHG AHDILQFYPA ASSHYLAGGG NPYGHHFGGS AYQSYYQQAA QAAAPEYYFP  120
TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR  180
RHKVCEHHSK APVVITAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP  240
SDADAADKKR AQANKAAASK DKAGSSSRNN MDTGDGLTTQ ILGSALFSKE QDQGMDLGEV  300
VKEAVDPKGK ASMQQQHANH HGMNHHGFPF PTSSGSCFPQ SQAVASDNTS NIAQLQEPSL  360
AFHQHHQQSN ILQLGQAMFD MDFDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-27	163	237	11	84	squamosa promoter binding protein-like 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	249	RRRRKSKPSDADAADKKR
2	233	238	RRRKSK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the formation of ligules and auricles during leaf organogenesis.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824698.1	0.0	protein LIGULELESS 1-like
Swissprot	O04003	0.0	LG1_MAIZE; Protein LIGULELESS 1
TrEMBL	A0A3L6Q0D9	0.0	A0A3L6Q0D9_PANMI; Protein LIGULELESS 1-like
STRING	Si022315m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52

Publications ? help Back to Top
Sylvester AW,Cande WZ,Freeling M Division and differentiation during normal and liguleless-1 maize leaf development. Development, 1990. 110(3): p. 985-1000 [PMID:2088734]