PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00985.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 88aa    MW: 10040.2 Da    PI: 8.4651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00985.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-091761344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                   W++ E +l+ ++ + +G +   +W++++r mg  +t++++++++
  Zmw_sc00985.1.g00030.1.am.mk 17 EWSPRENKLFEQVLACYGEDtpdRWHKVSRAMGGIKTAEEVRLHY 61
                                  7********************************778********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.621065IPR017877Myb-like domain
SMARTSM007173.1E-61467IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-111672IPR009057Homeodomain-like
CDDcd001674.98E-61761No hitNo description
PfamPF002494.1E-71761IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSGSRSSSR TGNAASEWSP RENKLFEQVL ACYGEDTPDR WHKVSRAMGG IKTAEEVRLH  60
YEILMEDYEL IKSGRVPFPK YNTKGAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2418851177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.14e-42protein RADIALIS-like 3
SwissprotQ1A1736e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLC5XFX69e-41C5XFX6_SORBI; Uncharacterized protein
STRINGSb03g030330.11e-41(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121