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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00985.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10040.2 Da PI: 8.4651 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.3e-09 | 17 | 61 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ E +l+ ++ + +G + +W++++r mg +t++++++++ Zmw_sc00985.1.g00030.1.am.mk 17 EWSPRENKLFEQVLACYGEDtpdRWHKVSRAMGGIKTAEEVRLHY 61 7********************************778********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.62 | 10 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.1E-6 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-11 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.98E-6 | 17 | 61 | No hit | No description |
Pfam | PF00249 | 4.1E-7 | 17 | 61 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSSGSRSSSR TGNAASEWSP RENKLFEQVL ACYGEDTPDR WHKVSRAMGG IKTAEEVRLH 60 YEILMEDYEL IKSGRVPFPK YNTKGAWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-24 | 18 | 85 | 11 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458271.1 | 4e-42 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 6e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | C5XFX6 | 9e-41 | C5XFX6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g030330.1 | 1e-41 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |