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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zmw_sc00972.1.g00280.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
NAC |
Protein Properties |
Length: 338aa MW: 38488.2 Da PI: 6.8389 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc00972.1.g00280.1 | genome | ZGD | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 109.1 | 5.1e-34 | 51 | 142 | 36 | 129 |
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
++++y++e ++ + +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfykgrap+g
Zmw_sc00972.1.g00280.1.sm.mk 51 QAELYYAEAERCK-IGTEDQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAPNG 129
5566666666665.2234667**************************************.999****************** PP
NAM 117 ektdWvmheyrle 129
+k+dW+mheyrle
Zmw_sc00972.1.g00280.1.sm.mk 130 QKSDWIMHEYRLE 142
***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
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to blast |
MKTHPALPVF PFRLRESNSI LEETARVQGL AEIGVLTGGA RRPGADARSK QAELYYAEAE 60 RCKIGTEDQN EWYFFSHKDK KYPTGTRTNR ATTAGFWKAT GRDKPIYVKN CLVGMRKTLV 120 FYKGRAPNGQ KSDWIMHEYR LETSENGMPH EEGWVVCRVF RKRLATVHRM PSDAPYWFND 180 HGGFMAPEPS SHHQQNAMVY QRQPSYPCKV ELEYHHLLPQ EHFLQLPQLE SPKLPDLVGS 240 VALQPCSLTQ EHVASRYMEQ ELQAEQVYLT AGHASGSDWR ALDKFVASQL ISNEDANSKE 300 PGSYSNQVQV FNQVEEKEEA LDYVSTSASC GGENDLWK
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-30 | 69 | 163 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 69 | 163 | 73 | 169 | NAC domain-containing protein 19 |
4dul_A | 8e-30 | 69 | 163 | 70 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-30 | 69 | 163 | 70 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |