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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00971.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 525aa MW: 56938.2 Da PI: 8.6039 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 241 | 270 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 ++rWT+eE+ l+ +v+++G+g W+tI r Zmw_sc00971.1.g00200.1.am.mkhc 241 KQRWTAEEEAALKAGVARHGPGKWRTILRD 270 79*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.84E-9 | 238 | 286 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-6 | 241 | 269 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-9 | 241 | 286 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.15E-12 | 242 | 323 | No hit | No description |
SuperFamily | SSF46785 | 9.8E-6 | 388 | 426 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.3E-6 | 390 | 426 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
TGWNEAGVWT RVKRWLGRPR AEYLFRFKGD TIPKIEGTPP PLASPARLLW RTHPNMFAKL 60 SALITHPCKR PCLALDIGTG SGQAAIVFLI SSLFSKNSWR RMDHHHHGGP LAEAAHWFDL 120 PMFNDVTARM RPEVLSVEIQ LRMSPDPVED SDHDGGLPPH HPPPGSSGPN GFLHLIARLG 180 HLALEAEPLV LTEFPSPRPP PDAPWRDPPL ELPADFVPGA GGGGGGGRAE DAQHLAMGAP 240 KQRWTAEEEA ALKAGVARHG PGKWRTILRD PDFGPLLSLR SNVDLKVGPA ARRGSRGGSA 300 GRFCEFAGVG GLAISELDKW RNLSVTAGGY GSREKARMAL KKGRQVPKVP AESMEVDEYH 360 MDNVHNAFLD VQPLAMVVEP LQLGDSPDKS VVRLDEIILE AIKNLKKASG SNKAAIASYI 420 EVNQKYRIAP TSPSLGGKST KLYSMEEMNR KNNVKQLAKP QVDSKLEKMR SMTKEEAAVF 480 AAKAVAEAEV AIAEAEEAAR VAEAAEADAE AAKVFLEAVT MLRAC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818200.1 | 2e-97 | single myb histone 1 | ||||
TrEMBL | A0A3L6SQP0 | 1e-102 | A0A3L6SQP0_PANMI; Single myb histone 1-like | ||||
STRING | Pavir.Ea02064.1.p | 8e-98 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |