PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00964.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 123aa MW: 13689.2 Da PI: 10.4823 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.5 | 1.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRr+g++KKA+ LS+LCda++ vi+f +tg+ly++ss Zmw_sc00964.1.g00090.1.sm.mk 9 KRIENEANRQVTFSKRRAGMFKKAKGLSILCDAQIGVIVFTNTGQLYDFSS 59 79***********************************************96 PP | |||||||
2 | SRF-TF | 54.8 | 1.2e-17 | 57 | 95 | 13 | 51 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 fs r+g++KKA+ELS+LCda++ vi+f +tg+ly++ss Zmw_sc00964.1.g00090.1.sm.mk 57 FSSSRAGMFKKAKELSILCDAQIGVIVFTNTGQLYDFSS 95 77789********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.824 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-14 | 57 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-14 | 57 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.507 | 57 | 97 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-6 | 61 | 96 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MVRGKTVLKR IENEANRQVT FSKRRAGMFK KAKGLSILCD AQIGVIVFTN TGQLYDFSSS 60 RAGMFKKAKE LSILCDAQIG VIVFTNTGQL YDFSSSRLCC VWFVGPIKQI VIASKNVIFD 120 IVI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165070.1 | 7e-25 | MADS-box transcription factor 23-like | ||||
TrEMBL | W9QWB2 | 1e-34 | W9QWB2_9ROSA; MADS-box protein | ||||
STRING | XP_010091612.1 | 2e-35 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |