PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00956.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 526aa MW: 59023.4 Da PI: 6.7069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56 | 7.4e-18 | 207 | 295 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 kv + ++++ ++lp +fa++++g s +tl+++sg++W++++ + ++++v+++GW+eFv +++++egD ++ Zmw_sc00956.1.g00210.1.am.mkhc 207 KVV--AGDFTES-ISLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLL 279 555..4444444.9*******888666..6779***************.3444455*********************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 Fk++g s f v vf++ Zmw_sc00956.1.g00210.1.am.mkhc 280 FKYTGASAF--DVLVFDA 295 ****99999..8888876 PP | |||||||
2 | B3 | 42.1 | 1.5e-13 | 418 | 517 | 1 | 99 |
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 f++v+ ps+v + g+++l+ +fa++++g ++++l+ +sg W ++i ++ ++ + ++GW +F ++ng+ e Zmw_sc00956.1.g00210.1.am.mkhc 418 FVQVMHPSHVRGKkrGIVILSAEFATKFMGT--LRREIILRRSSGvGAWHARYICNRFARG-LCGRGWCSFTEDNGVVE 493 6777878887655448899*********887..6679********99******86666655.7999************* PP T-EEEEEE-SS.SEE..EEEEE-S CS B3 77 gDfvvFkldgr.sefelvvkvfrk 99 +D+++F++++ ++ +++v+v+rk Zmw_sc00956.1.g00210.1.am.mkhc 494 RDVCLFEVMQGaRRPTMTVHVLRK 517 *******9977799999**99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-23 | 199 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-22 | 201 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.367 | 202 | 296 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.22E-18 | 203 | 294 | No hit | No description |
SMART | SM01019 | 1.8E-11 | 205 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-15 | 206 | 294 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-16 | 412 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-17 | 412 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.19E-10 | 416 | 513 | No hit | No description |
Pfam | PF02362 | 3.0E-11 | 418 | 517 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0073 | 418 | 518 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.163 | 435 | 518 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSPQPQWAVL GWQAGCTGPS AHFQREPSSE ENARTTPAWK GSISSICRSG RGAPSPSEAT 60 PGPQLWSLPS VSALYRAVCG HQHPATDLLE FCDYKMNTDH ERCVERAGFS FWSDTNDGDK 120 HFFKIMAAET SPRKYRSFTW TPRAAKLKSP ELLPFHPSLL GFHLEIPFYL PTLQIMKNLD 180 KKCRVCMEWQ EHCYWSHMAD EEKHFFKVVA GDFTESISLP SRFANNFNGH ISEVVTLKSP 240 SGKTWSIRVG SDDGDEVVFR SGWNEFVGEQ RVEEGDCLLF KYTGASAFDV LVFDASGCEK 300 KTPPCVSQIR GYQQEEDGGD AQLELEAAVH KNTGRSNAST TNLPDGTEQD GWGWRACEVK 360 EEDEDDVEIL DGDGGAPATA AGYYFGNVGP ASEYRLTEED REQIWSVRVP VRPRNPVFVQ 420 VMHPSHVRGK KRGIVILSAE FATKFMGTLR REIILRRSSG VGAWHARYIC NRFARGLCGR 480 GWCSFTEDNG VVERDVCLFE VMQGARRPTM TVHVLRKVRG RYVPLS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982409.2 | 1e-140 | B3 domain-containing protein Os03g0622200 | ||||
Swissprot | Q10GM3 | 1e-104 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A368SJ49 | 1e-139 | A0A368SJ49_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib03973.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Publications ? help Back to Top | |||
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