PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00956.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 276aa MW: 31178.7 Da PI: 10.1337 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.6e-14 | 199 | 271 | 22 | 97 |
H.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 22 faeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 +a+e+ + ++t ++ ++ g++W+ ++ + +++++ +l +GW +F+++ngL+++D+++++l+++ ++ +++v+++ Zmw_sc00956.1.g00120.1.sm.mkhc 199 YAAEYlP---AVGQT-VVLQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLRVRDVCLLELMENeRNITMNVHII 271 5555531...22334.45677*********77777766.6999**********************9878888888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 5.0E-5 | 185 | 274 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-17 | 194 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-15 | 194 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-13 | 195 | 271 | No hit | No description |
Pfam | PF02362 | 9.9E-13 | 198 | 272 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.814 | 211 | 274 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MVKNEYLNKL LSSKVDTSQK KHFKRKPDME PMDNCSYKRR QIAINISNSK SLQSCETIGS 60 KTAKGNNGGI EGSPNKWKDP QPLRNPFKSI VMKRKKVVLG SKKVETSTST ADYEKPVHEK 120 CGNTSGGMMN MCANMSSQNM VWTDRFYHGG KTIRMATSTA LEESATHATD GDGFLRAGPY 180 PSESIAKMAS EVHEIGVRYA AEYLPAVGQT VVLQRMGKTW NTQMVIHNGR RWFLNGGWTK 240 FARDNGLRVR DVCLLELMEN ERNITMNVHI IFREEF |