PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00945.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 381aa    MW: 41083.9 Da    PI: 6.7445
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00945.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-13191224239
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgta 39 
                                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ta
  Zmw_sc00945.1.g00140.1.am.mk 191 RYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFDTA 224
                                   7********.**********7.....338*********95 PP
2AP227.57.6e-092272513155
                           AP2  31 fslgkfgtaeeAakaaiaarkkleg 55 
                                   ++lg+f+tae Aa+a++aa+++++g
  Zmw_sc00945.1.g00140.1.am.mk 227 VWLGTFDTAEAAARAYDAAALRFRG 251
                                   8*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.08191259IPR001471AP2/ERF domain
PfamPF008476.5E-8191223IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-11191224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17191225IPR001471AP2/ERF domain
SMARTSM003802.6E-30191265IPR001471AP2/ERF domain
PRINTSPR003671.1E-13192203IPR001471AP2/ERF domain
CDDcd000189.36E-11199261No hitNo description
SuperFamilySSF541718.5E-11226261IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-16226261IPR001471AP2/ERF domain
PfamPF008471.4E-4227251IPR001471AP2/ERF domain
PRINTSPR003671.1E-13241261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDQDHTCRAL YMYKERNHSP KRFTYLPTCV RLESRTETAS AAWLFMCDAA VEDPGEQRRR  60
LLAAGEDPVM SLSPPALSRS RQAQEMSAMV SALARVVAGS APPAATSLAP VSAEEAPWWP  120
WEELDDAPPS ALVLNAHGAA RQPHEQHWPP APAAAAGASS SWQHRVSTKE ELLSPPSGGS  180
GAGSSAPRSR RYRGVRRRPW GKWAAEIRDP HRAARVWLGT FDTAXXVWLG TFDTAEAAAR  240
AYDAAALRFR GTRAKLNFPE SATLPSSPPT PQQQHLPPAA SRTLPPPSRP EALLESHSQQ  300
QALPGAEAGD YAEYARFLQD AGDGEPGGSS STSLSVSPAP FSFGAEREGG GSGSHDPATS  360
PSAHWYGGTY PQWRWGWDQA D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18178266479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808413.18e-68ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7E5K05e-75A0A2T7E5K0_9POAL; Uncharacterized protein
STRINGPavir.Cb02005.1.p8e-50(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540