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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00904.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25164.4 Da PI: 10.5102 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.5 | 9.2e-10 | 80 | 126 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 +++GV+ + grW+ e r r r++lg+f t+eeA++ ++ + + Zmw_sc00904.1.g00060.1.sm.mk 80 RFRGVYARQ-PGRWAMEFRSH-----RpkVRHWLGTFATEEEAKATYDTFEAR 126 69***9887.9****996663.....455*******************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.1E-4 | 80 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-5 | 80 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.958 | 80 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-12 | 80 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-10 | 80 | 129 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDARSIRISF TDPDATDSDS GDDASCRTAR SKQKATRKTS IVIFVAGPGF GSKAQMTGST 60 VPRGTKCGAT TAKRTAPKRR FRGVYARQPG RWAMEFRSHR PKVRHWLGTF ATEEEAKATY 120 DTFEARFLSS QPGGVLQPAP KHAGDGGSGR DVHRPLHPPD ENMQQIVLAL KAAMTAAMKS 180 SAEPRSSVVS APSISTLPMA SPPSSAAEKD GIGSHTCDGR AEPAICLHLF LFHW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974648.1 | 3e-47 | dehydration-responsive element-binding protein 1E | ||||
TrEMBL | K3YM52 | 6e-46 | K3YM52_SETIT; Uncharacterized protein | ||||
STRING | Si015330m | 1e-46 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 |