PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00899.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Dof
Protein Properties Length: 188aa    MW: 19180.8 Da    PI: 10.077
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00899.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.57.1e-393696262
                        zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                                  +e+ l+cprCds ntk+CyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+s+
  Zmw_sc00899.1.g00140.1.sm.mk 36 PEQGLRCPRCDSPNTKLCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRSR 96
                                  67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.9E-323894IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8544094IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-264093IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASSTAVAGG EDVVGPRAGG GNGGGGTTPQ QKPPPPEQGL RCPRCDSPNT KLCYYNNYSL  60
SQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKRSRSSVM SASAAVAAAS SHLSLNLPVD  120
GIGVTAASAD QQVAARLGFL GVGAPVVSSP IGGTPAADYQ GAASAFGKAV HCSGYRLFTL  180
GLQCIQKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:30626969}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:30626969}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796800.15e-57dof zinc finger protein DOF5.7-like
SwissprotQ84TE96e-38DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBLA0A3L6SBJ52e-56A0A3L6SBJ5_PANMI; Dof zinc finger protein DOF5.7-like
STRINGPavir.Ib03857.1.p8e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]