PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00877.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 822aa MW: 89465 Da PI: 10.9512

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00877.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.4	1e-24	677	726	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k+ rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyey+s Zmw_sc00877.1.g00180.1.am.mk 677 RIEDKTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPGGKLYEYAS 726 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.427	668	728	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-32	668	727	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.55E-32	669	729	No hit	No description
PRINTS	PR00404	9.3E-25	670	690	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-24	670	728	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-24	677	724	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-25	690	705	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-25	705	726	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MASETIHHQA GSEGRKKECI SEEAPHGVYS EEGAARSDHA PRSRKRPRIS PTNFPLCPNS 60 TTHPEHRRKQ CTPSRPNSST PAMNRRGAHE RTADRRKNGK APGLPCLPLP LEGVGLGAEL 120 HGRRPGGKSR SPTLLARAAA CLSRSGAEGT GAAESTATST TELKLKPWPG GARSLPLSQN 180 QNSSAKRSRF CVGTKPIQLP REATMRAVNG GMARQQGKNT SAVRPKKLTG PVKQGGHLSL 240 AGKRQGRLCE DCGLGLVQDS SGAARTEIRR PLRWSFVYAP PRVQYFLKDA GCTEFCVLCY 300 SYCAPQPKNN PSSPWHTVMG WPSMMQARNV PDSKSSPRAH ANVFFPSHLH AARRHPLRSH 360 CKCVRTPLLA RARGSARHMA ACCVGPLERT CGSEQGQPAL PMPRDRRTEE GTLACRLVHA 420 GDDSRAAQGQ QRATRSRSHA VGARRGNHLL RAFLSPPRCL VASDAGAFVL EQALVPPIIR 480 HNTVTRRPCS ARVNRCSNIS TCSMSASLSE HVTRDLRTSS DSEIFTRPAT ASVGAGVVSM 540 DRAVLGGSSS PPSVCRPAVH VLRRTSDLPY TYYDARAACL RRVQLLRFLR FASCRSAEEA 600 SELVDQKEEP LDSWSGAKIN CTRERRFIGG LEVGPRSAVT LVSSSSPRPH HPRRRGSHAA 660 THPGEAMARR GPVELRRIED KTSRQVRFSK RRAGLFKKAF ELALLCDAEV ALLVFSPGGK 720 LYEYASTRFA PSPPPPPPSR LAATAAADQP PCACAPCARD YPKYMRVVFP APLAFPWSGA 780 ERLFRLATST CLNTCDVLYV SSTDKGGIWR ERARSRVALD AH

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MASETIHHQA GSEGRKKECI SEEAPHGVYS EEGAARSDHA PRSRKRPRIS PTNFPLCPNS  60
TTHPEHRRKQ CTPSRPNSST PAMNRRGAHE RTADRRKNGK APGLPCLPLP LEGVGLGAEL  120
HGRRPGGKSR SPTLLARAAA CLSRSGAEGT GAAESTATST TELKLKPWPG GARSLPLSQN  180
QNSSAKRSRF CVGTKPIQLP REATMRAVNG GMARQQGKNT SAVRPKKLTG PVKQGGHLSL  240
AGKRQGRLCE DCGLGLVQDS SGAARTEIRR PLRWSFVYAP PRVQYFLKDA GCTEFCVLCY  300
SYCAPQPKNN PSSPWHTVMG WPSMMQARNV PDSKSSPRAH ANVFFPSHLH AARRHPLRSH  360
CKCVRTPLLA RARGSARHMA ACCVGPLERT CGSEQGQPAL PMPRDRRTEE GTLACRLVHA  420
GDDSRAAQGQ QRATRSRSHA VGARRGNHLL RAFLSPPRCL VASDAGAFVL EQALVPPIIR  480
HNTVTRRPCS ARVNRCSNIS TCSMSASLSE HVTRDLRTSS DSEIFTRPAT ASVGAGVVSM  540
DRAVLGGSSS PPSVCRPAVH VLRRTSDLPY TYYDARAACL RRVQLLRFLR FASCRSAEEA  600
SELVDQKEEP LDSWSGAKIN CTRERRFIGG LEVGPRSAVT LVSSSSPRPH HPRRRGSHAA  660
THPGEAMARR GPVELRRIED KTSRQVRFSK RRAGLFKKAF ELALLCDAEV ALLVFSPGGK  720
LYEYASTRFA PSPPPPPPSR LAATAAADQP PCACAPCARD YPKYMRVVFP APLAFPWSGA  780
ERLFRLATST CLNTCDVLYV SSTDKGGIWR ERARSRVALD AH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	8e-15	670	727	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	8e-15	670	727	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	8e-15	670	727	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	8e-15	670	727	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3kov_B	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3kov_I	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3kov_J	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3mu6_A	7e-15	670	727	2	59	Myocyte-specific enhancer factor 2A
3mu6_B	7e-15	670	727	2	59	Myocyte-specific enhancer factor 2A
3mu6_C	7e-15	670	727	2	59	Myocyte-specific enhancer factor 2A
3mu6_D	7e-15	670	727	2	59	Myocyte-specific enhancer factor 2A
3p57_A	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3p57_B	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3p57_C	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3p57_D	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3p57_I	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
3p57_J	1e-14	670	727	2	59	Myocyte-specific enhancer factor 2A
6bz1_A	1e-14	670	727	3	60	MEF2 CHIMERA
6bz1_B	1e-14	670	727	3	60	MEF2 CHIMERA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP43967	3	3