PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00860.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 324aa    MW: 36068.9 Da    PI: 6.69
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00860.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.1e-2255125171
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                   +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + 
  Zmw_sc00860.1.g00250.1.am.mk  55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASA 125
                                   7**************************************************************99988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.41E-2354119No hitNo description
PfamPF138373.3E-1755148No hitNo description
PROSITE profilePS500907.51556112IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAVEPPPQ PLPSSSSLER ERLPQWSHAE  60
TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA  120
AAASAAQPAE LDPGATAARQ FPFHDEMRRI FEARAERARA LESKKAKGKD VRPEDNEGGG  180
RGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTRS ADQGEVEAML  240
REFTRRQLEM EERWMEAAEA REAERRQREE ESARSDGTSS SQHCSPSSAA TPRDTSPLQS  300
IHPRRYGPTP RTNPASELAS SPRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805344.12e-84LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like
TrEMBLA0A3L6RAE44e-80A0A3L6RAE4_PANMI; Uncharacterized protein
STRINGONIVA05G01910.11e-80(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134