PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00860.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 263aa MW: 28203.9 Da PI: 6.8458

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00860.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29	1.8e-09	62	83	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd+C +aHg Zmw_sc00860.1.g00220.1.am.mk 62 PCPEFRKGGSCRKGDNCEYAHG 83 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	1.6E-7	62	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.0E-6	62	85	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.253	62	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MCSGPRKPSN PPPVAATATA KDSAAAALLL ELAAADDLVA FRRAVEDDKA ASIDAACHCC 60 VPCPEFRKGG SCRKGDNCEY AHGVFECWLH PAQYRTRLCK DELHALSLKQ AGDMPAYNPM 120 PDTQLHMPTS PMVGANTAFG MDHSMAKAIM SSRASAFAKR SQSFIDRGGR APAARSLMSP 180 APTSSPSMLS DWSSPDGKLD WGVQGDELNK FRKSASFAFR GQFAAPVTTT PAEPDVSWVN 240 SLVRDGHAGD IFAQWPEQEQ IMA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692465.1	4e-96	PREDICTED: zinc finger CCCH domain-containing protein 33-like
Swissprot	Q688R3	1e-86	C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBL	A0A287EPU9	1e-94	A0A287EPU9_HORVV; Uncharacterized protein
STRING	Si021557m	1e-90	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6013	21	33

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]