PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00857.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 284aa MW: 30623.2 Da PI: 8.1364 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.8 | 3.6e-29 | 43 | 118 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......s 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++ Zmw_sc00857.1.g00020.1.sm.mk 43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQdlmvghlP 118 78*************************************************************8887733333220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.0E-27 | 44 | 105 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.704 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR 60 RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP 120 MPLMHEEKFD QLAAAAALAR ERAKAGHGDG AADAEGSGAH NMGRFPNIGY HHFMGLNSSF 180 AMVNSTMAYS NYSSEAWNNN MHENSAAGSP HVAAVAAAAA AGAQHSSLLS LAPGPHQLVF 240 YPSEGDQQFQ VDNLAGAQHS SLLSLAPGPH QLVFYPSEGD RSSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814168.1 | 1e-118 | transcription factor PCF5-like | ||||
Refseq | XP_025814169.1 | 1e-118 | transcription factor PCF5-like | ||||
TrEMBL | A0A3L6SMS6 | 1e-120 | A0A3L6SMS6_PANMI; Transcription factor PCF5-like | ||||
STRING | Pavir.J15913.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |