|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Zmw_sc00834.1.g00160.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
Family |
B3 |
Protein Properties |
Length: 408aa MW: 44112.3 Da PI: 9.5404 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc00834.1.g00160.1 | genome | ZGD | - |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 91.5 | 6.2e-29 | 99 | 191 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77
f+kv tpsdv+k++rlv+pk++ae++ + ++ l++ed+ g++W+++++y+++s++yv+tkGW++Fvk+++L +
Zmw_sc00834.1.g00160.1.am.mk 99 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANGKGLLLSFEDSAGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAT 179
89*************************999444567889****************************************** PP
-EEEEEE-SSSE CS
B3 78 DfvvFkldgrse 89
D+v F++ ++
Zmw_sc00834.1.g00160.1.am.mk 180 DTVSFSRGAAED 191
******653333 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MDQFPASGRF SKEEEADEEQ EDASNSMREI PFMAACSVAT AASSSVAAAS ASSQSLASAS 60 ASSSAPFRSA LGDGGGASGS GAGEEEGKAD RAVEKEHMFD KVVTPSDVGK LNRLVIPKQY 120 AEKYFPLDAA ANGKGLLLSF EDSAGKQWRF RYSYWNSSQS YVMTKGWSRF VKEKRLVATD 180 TVSFSRGAAE DARHRLFIDW KRRIDSRDPF RFPRLALPMP LASHYGPHHY RPWGFGGGGS 240 GFFVPPSPPA TLYEHRLRQG LDFRGMNYHP APAVGRQLFY FGAARMPQHA PILPRAPSPL 300 HYTVQPTSAP PVVLDSVPVI ESPTAAAKRV RLFGVNLDNQ DSAGGGGGEP SNLQGNALSL 360 QMPGWQQRAP TLRLLEFPRR GAESSAASSP SLSSSSKREA RSALDLDL
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 9e-55 | 94 | 203 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-55 | 94 | 203 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |