PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00807.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 358aa    MW: 38716 Da    PI: 7.6645
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00807.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.82.2e-07276306336
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                   y+GV+++++ grW A+I  +s    +k  +lg+f
  Zmw_sc00807.1.g00110.1.am.mk 276 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTF 306
                                   9***************999754...4******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.85144239IPR001471AP2/ERF domain
SMARTSM003802.5E-5187245IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-8203240IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-7209240IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-6274308IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-5275308IPR001471AP2/ERF domain
SMARTSM003800.0051275318IPR001471AP2/ERF domain
PROSITE profilePS510328.992275306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTNTNNGGNS GGGSANNGGT NAAASGWLGF SLSPHMASSM DDHHHHHHHV QQQQHNHHHG  60
IFFPSVAAAY GLGGAGDAAV ATSGPYYAPQ LASMPLKSDG SLCIMEALRR TDQDHHGPKL  120
EDFLGAAQSQ AMALSLDNGS SFYHYGGVGV GHHHGGLLQP DAYVGPSAAP TLMADDEEAA  180
AAAATAMASW AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL  240
EDYQEELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD  300
LYLGTFRHSA TPCPTVAMIS RVYTACMPTG DPFAGRPAGR VRTDVDRVIL IPDHRVRV
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84Z028e-78CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D3GLU91e-105A0A0D3GLU9_9ORYZ; Uncharacterized protein
STRINGOBART07G01750.11e-105(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]