PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00806.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 325aa    MW: 33749.8 Da    PI: 8.7181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00806.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19152201255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Zmw_sc00806.1.g00120.1.am.mk 152 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDVAALQFRG 201
                                   7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-35152215IPR001471AP2/ERF domain
PROSITE profilePS5103225.949152209IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22152211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-33152211IPR001471AP2/ERF domain
PfamPF008479.1E-14152201IPR001471AP2/ERF domain
PRINTSPR003677.4E-12153164IPR001471AP2/ERF domain
CDDcd000181.30E-16160211No hitNo description
PRINTSPR003677.4E-12175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MHCTSSGFTL SLPPLLACLH VSLYICCPPK VATSPPAGGG SGEQRRRLAG VAEEGGEERS  60
AVDSASSTPS MPLSQSRRDR EMSAMVAALS AVVAGEAAVA PEGASSAVCY DYGSATAATP  120
YTPPSATTAS SPSPSAQLAS PSSSSDARRR RRYRGVRQRP WGKWAAEIRD PHRAARVWLG  180
TFDTAEAAAR AYDVAALQFR GARAKLNFPE SAALPAPTAP RVASVPPPPE WPEGVLESQA  240
PMMMGDGGEY AEYARFLQGA GAPPRLVDQT VARAPQTPST VPVPGAAHHF RPQSSRSEPP  300
PPLPVPRPGF GWGPSPPPGD PSASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21151209463ATERF1
3gcc_A4e-21151209463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.11e-44ethylene-responsive transcription factor ERF110
TrEMBLB8BND09e-43B8BND0_ORYSI; Uncharacterized protein
STRINGORUFI12G04720.13e-43(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540