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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00804.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 330aa MW: 34788.8 Da PI: 10.8119 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.5 | 3.8e-12 | 236 | 260 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ Zmw_sc00804.1.g00200.1.am.mkhc 236 CRGCRTVLLYPQGAPSVCCAVCQAI 260 9**********************97 PP | |||||||
2 | zf-LSD1 | 21.8 | 3.3e-07 | 275 | 288 | 1 | 14 |
zf-LSD1 1 CggCrtlLsYPrGA 14 CggCrtlL+Y+r+A Zmw_sc00804.1.g00200.1.am.mkhc 275 CGGCRTLLMYTRNA 288 ************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.6E-11 | 233 | 263 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.4E-10 | 236 | 260 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.5E-6 | 272 | 288 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-4 | 275 | 288 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MPKNNSSQSI SKFSRHGMTA SIDPVEQDEA RGFLVAAAAS PASARPRGNG DQTGGRAPAS 60 ACKRSTDQTP RKKAGNQFLS INTFSCAQKS LKRADETQSD RKPTPPPPRF SRRGEEIPAA 120 LARPSSPEPY LPASHPPAPL RVGDSGDRRT ASPDARTPVS GILLHLHAFL GLDRARPSYR 180 ASASIGRVRV GAPRASLGWM IDLLIGFGAG VPARTVRRRS GGVVAFASCM QNQIVCRGCR 240 TVLLYPQGAP SVCCAVCQAI TTVPPPGLEM AQLICGGCRT LLMYTRNADT PKTQPQNVTV 300 VVENPMTVDE KGKLVSNVAV GVTAGSAGKN |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22220 | 4 | 7 |