![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00804.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 854aa MW: 92938.6 Da PI: 6.4679 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r+++ +++ +++ +q+kvWFqNrR +ek+ Zmw_sc00804.1.g00030.1.am.mkhc 26 YVRYTPEQVEALERVYSECPKPSSLRRQQIIRECpilsNIEPKQIKVWFQNRRCREKQ 83 6789****************************************************97 PP | |||||||
2 | START | 174.9 | 5.1e-55 | 174 | 381 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++ Zmw_sc00804.1.g00030.1.am.mkhc 174 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVD 251 68999*****************************************************.8888888888********** PP EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS START 81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153 +l vi +g g+++l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+l Zmw_sc00804.1.g00030.1.am.mkhc 252 VLHVIPTGngGTIELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYL 330 **************************999****************************9999999*************** PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 i+p+++g+s +++v+hvdl++++++++lr+l++s + ++kt+ a+l++ + Zmw_sc00804.1.g00030.1.am.mkhc 331 IRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKTTIAALRHIR 381 **********************************************99865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 11 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.256 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-15 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 24 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.90E-16 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 5.4E-16 | 26 | 83 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.81E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 27.078 | 164 | 364 | IPR002913 | START domain |
CDD | cd08875 | 2.02E-70 | 168 | 384 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.8E-24 | 172 | 356 | IPR023393 | START-like domain |
SMART | SM00234 | 2.2E-47 | 173 | 383 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.55E-39 | 174 | 384 | No hit | No description |
Pfam | PF01852 | 9.1E-53 | 174 | 381 | IPR002913 | START domain |
Pfam | PF08670 | 1.3E-50 | 711 | 853 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 854 aa Download sequence Send to blast |
MVAAGGGKDR SSPGGGGAPQ VDTGKYVRYT PEQVEALERV YSECPKPSSL RRQQIIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSRLVY 120 ENGYMKQQLH NPSVATTDTS CESVVTSGQH HQQQNSAAPR PPRDANNPAG LLAIAEETLA 180 EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP TKVAEILKDR 240 PSWYRDCRCV DVLHVIPTGN GGTIELIYMQ TYAPTTLAAP RDFWTLRYTS GLEDGSLVIC 300 ERSLTQSTGG PSGPNTPNFV RAEVLPSGYL IRPCEGGGSM IHIVDHVDLD AWSVPEVLRP 360 LYESPKILAQ KTTIAALRHI RQIAHESSGE MPYVGGRQPA VLRTFSQRLS RGFNDAVNGF 420 PDDGWSLLSS DGAEDVTIAI NSFPNKLVGS HVNSSHLFSA IGGGILCAKA SMLLQNVPPA 480 LLVRFLREHR SEWADPGVDA YSAAALRTSP YAVPGLQASG FMGSQVILPL AHTLEHEELQ 540 FLEVIRLEGH SFCHDEVVLS RDMYLLQLCS GVDENAAGAC AQLVFAPIDE SFADDAPLLP 600 SGFCVIPLDA KTDPPSGTRT LDLASTLEVG SGGTTRASSD ASSTSNTRSV LTIAFQFSYE 660 NHLRESIAAM ARQYVRTVVA SVQRVAMAIA PSRLGGQLEV KQTPGSPEAQ TLARWIGRSY 720 RFHTGAELLR TETQCTDSSL KALWQHSDSI MCCSLKAAPV FTFANQAGLD MLETTLIALQ 780 DIPLEKILDD DGRKALCSEH PKLMQQGFAY LPGGVCVSSM GRPVSYEQAV AWKVLSDDDT 840 PHCLAFMFVN WSFV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982339.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | K4A5S4 | 0.0 | K4A5S4_SETIT; Uncharacterized protein | ||||
STRING | Si034228m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Publications ? help Back to Top | |||
---|---|---|---|
|