PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00790.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 365aa MW: 39651.3 Da PI: 7.2237

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00790.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	86.4	3.8e-27	76	170	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++sql+eK+rrLK+Kf+ +++++++g +p+ + Zmw_sc00790.1.g00100.1.sm.mk 76 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRSQLSEKLRRLKNKFRSMSARVAKGLDPARLA 155 79*****************.556878888********************************************** PP DUF573 83 ehdqkifelskkiWg 97 +hd+++++l++++W+ Zmw_sc00790.1.g00100.1.sm.mk 156 PHDRDVLHLCSRLWD 170 ************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-24	77	170	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MASEDQQTLP VPVPVPVPVP PNPTATPTAP ADPTAPSGAR KLPIKRRSPR PSSSSPPSSG 60 SDQQQEQEQE PQPPFKFQRI WSESDELRFL QGLLGCGAQG LVFPRDLNVF YDRFSESMPQ 120 PYTRSQLSEK LRRLKNKFRS MSARVAKGLD PARLAPHDRD VLHLCSRLWD PANAATSPFA 180 ASAGTGASGN RRRRANPHGT LQSPDAPGDS NTNRFNGISF PDGSNCEDMF FIEQESGHLG 240 NHEGASLVAD STFSGIALEQ PQTTAAVPIG DHGLVSEMNG NHKLVVPCSS EHRMANAVLD 300 VFEECLREAK ANGIFRGGNA KGSASESELT KRWRAQRMDE LDVLNRRLRL LVEDTAAAGN 360 MPSSL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MASEDQQTLP VPVPVPVPVP PNPTATPTAP ADPTAPSGAR KLPIKRRSPR PSSSSPPSSG  60
SDQQQEQEQE PQPPFKFQRI WSESDELRFL QGLLGCGAQG LVFPRDLNVF YDRFSESMPQ  120
PYTRSQLSEK LRRLKNKFRS MSARVAKGLD PARLAPHDRD VLHLCSRLWD PANAATSPFA  180
ASAGTGASGN RRRRANPHGT LQSPDAPGDS NTNRFNGISF PDGSNCEDMF FIEQESGHLG  240
NHEGASLVAD STFSGIALEQ PQTTAAVPIG DHGLVSEMNG NHKLVVPCSS EHRMANAVLD  300
VFEECLREAK ANGIFRGGNA KGSASESELT KRWRAQRMDE LDVLNRRLRL LVEDTAAAGN  360
MPSSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001143574.2	1e-164	uncharacterized protein LOC100276272
TrEMBL	B6T7U5	1e-163	B6T7U5_MAIZE; Uncharacterized protein
TrEMBL	F1DK22	1e-163	F1DK22_MAIZE; GEBP transcription factor (Fragment)
STRING	GRMZM2G041818_P01	1e-164	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43