PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00790.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 616aa MW: 64910.8 Da PI: 4.9007 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 466.9 | 1.2e-142 | 233 | 612 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 lv++Ll+cAeav+++++++a+al++++ las++g +m+++aayf eALa+r++r ++p ++s + ++++a+ Zmw_sc00790.1.g00030.1.sm.mk 233 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAADS--SLLDAAFAD 303 689****************************************************........3333333..344444444 PP GRAS 82 kl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159 l f+e +P+lkf+h+taNqaIlea++g++rvH+iDf+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+ Zmw_sc00790.1.g00030.1.sm.mk 304 LLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVIDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQ 384 33445**************************************************************************** PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvksl 234 ++g++La+fA++++v+f+++ lva +l+dle+ +L+ + E++aVn+v++lhrll++++sle+ vL +v+ + Zmw_sc00790.1.g00030.1.sm.mk 385 QVGWKLAQFAHTIHVDFQYRGLVAATLADLEPFMLQQEGeekndePEVIAVNSVFELHRLLAQPGSLEK----VLGTVRAV 461 ***********************************54434445669***********************....******** PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleak..........lpreseerikvErellgreivnvvacegaer 305 +Pk+v+vveqea+hns+sFl+rf+e+l+yys++fdsle + +++++ +++++++++lgr+i+nvvacegaer Zmw_sc00790.1.g00030.1.sm.mk 462 RPKIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGgsgqsdaspgAAAAAGTDQVMSEVYLGRQICNVVACEGAER 542 *************************************998899999988877888************************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +erhe++++Wrer+++aGF+p++l+++a+ qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr Zmw_sc00790.1.g00030.1.sm.mk 543 TERHEKMGQWRERFGRAGFEPLHLGSNAYRQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 612 *********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 3.4E-35 | 38 | 108 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 1.3E-30 | 38 | 115 | No hit | No description |
PROSITE profile | PS50985 | 67.926 | 207 | 591 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-140 | 233 | 612 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006808 | Biological Process | regulation of nitrogen utilization | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010233 | Biological Process | phloem transport | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MKREYQDAGG SASGGADLVS SKDKMMVAPA AEQEEEVDAL LAALGYKVRA SDMADVAQKL 60 EQLEMAMETG GAAADDGFVS HLATDTVHYN PSDLSSWVES MLSELNAPLP PAPAPPAPLL 120 ASTSSTVTGG GGSGAGYFDA PPAVDSSSST YALKPIPSPV AALGDPSVDS AREPKRMRTG 180 GGSTSSSSSS SSSLGGGGAR SSVVEGAPPA SAAANAPAVP VVMVDTQEAG IRLVHALLAC 240 AEAVQQENFS AAEALVKQIP MLASSQGGAM RKVAAYFGEA LARRVYRFRP AADSSLLDAA 300 FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVI DFGIKQGMQW PALLQALALR 360 PGGPPSFRLT GVGPPQPDET DALQQVGWKL AQFAHTIHVD FQYRGLVAAT LADLEPFMLQ 420 QEGEEKNDEP EVIAVNSVFE LHRLLAQPGS LEKVLGTVRA VRPKIVTVVE QEANHNSGSF 480 LDRFTESLHY YSTMFDSLEG GGSGQSDASP GAAAAAGTDQ VMSEVYLGRQ ICNVVACEGA 540 ERTERHEKMG QWRERFGRAG FEPLHLGSNA YRQASTLLAL FAGGDGYRVE EKDGCLTLGW 600 HTRPLIATSA WRLSAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-62 | 240 | 611 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-62 | 240 | 611 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354393.1 | 0.0 | DELLA protein DWARF8 | ||||
Swissprot | Q9ST48 | 0.0 | DWRF8_MAIZE; DELLA protein DWARF8 | ||||
TrEMBL | H9A292 | 0.0 | H9A292_ERATE; Reduced height-2 | ||||
STRING | GRMZM2G144744_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 |
Publications ? help Back to Top | |||
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