PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zmw_sc00787.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 122aa MW: 13652.6 Da PI: 9.517

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00787.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	56	75	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Zmw_sc00787.1.g00020.1.sm.mkhc 56 YYLKTGTCKFGATCKFHHPR 75 9*****************96 PP
2	zf-CCCH	17.5	7.3e-06	97	115	3	21
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 +++C ++ rtG+Ck+G +C Zmw_sc00787.1.g00020.1.sm.mkhc 97 EKECAYYIRTGQCKFGMTC 115 679*************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.014	48	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.089	48	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-8	55	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	55	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-5	56	76	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	29	94	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.155	94	115	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MGEIATRLSE GDNRRTSEPF RTILPYGMPS SSTSPSIIVH TSTGLPQQPR TSTGPYYLKT 60 GTCKFGATCK FHHPREKAGM ANRVQWNSLG YPLRPNEKEC AYYIRTGQCK FGMTCSDWLV 120 VL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008676804.1	8e-32	zinc finger CCCH domain-containing protein 33 isoform X2
Swissprot	Q2R4J4	2e-32	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0A9NQM2	1e-30	A0A0A9NQM2_ARUDO; Uncharacterized protein
TrEMBL	A0A0E0F5M8	1e-30	A0A0E0F5M8_9ORYZ; Uncharacterized protein
STRING	ORGLA11G0112800.1	3e-31	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34972	2	4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]