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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00783.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 29923.7 Da PI: 6.9973 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.9 | 2.4e-24 | 125 | 182 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK +++++pr+Y+rC++a +Cpvkk +r+aed ++++ +YegeH+h Zmw_sc00783.1.g00050.1.sm.mk 125 VKDGYQWRKYGQKLTRDNPYPRAYFRCAHAsSCPVKK--KRCAEDSSMLVAHYEGEHDHA 182 58***************************99******..7*******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-23 | 119 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.897 | 120 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-20 | 122 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-26 | 125 | 183 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-19 | 126 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDNGKCSSPT GTGAGLLPLF GPSMPFSIDL CSSRPRMRQQ AAESLEEKLR RVSEENRRLT 60 CALDAILADL PHLRALNASP APSPSNAAAT ETVASDAVGV TAEPRPKVAT VRVRAEPSDA 120 EANQVKDGYQ WRKYGQKLTR DNPYPRAYFR CAHASSCPVK KKRCAEDSSM LVAHYEGEHD 180 HAKGAQNEFV DDASTSQPCS ISINSLGRTI TLGLMNQGSG SNEEAVVRDA VAPEFRKVLV 240 DELVIFLKND SEFMESLTSA VTARMLEKNS TGYFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-17 | 125 | 181 | 14 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}. | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956832.1 | 1e-121 | WRKY transcription factor WRKY62 | ||||
Swissprot | B8BF91 | 5e-71 | WRK62_ORYSI; WRKY transcription factor WRKY62 | ||||
Swissprot | Q6EPZ0 | 5e-71 | WRK62_ORYSJ; WRKY transcription factor WRKY62 | ||||
TrEMBL | K3ZW13 | 1e-120 | K3ZW13_SETIT; Uncharacterized protein | ||||
STRING | Si030794m | 1e-120 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12921 | 28 | 34 |