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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00781.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 411aa MW: 44910.8 Da PI: 8.1986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.7e-09 | 227 | 302 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 ++h+ E+rRR ri +++ +L++l+P + ++ + a++Le++++Y+k Lq Zmw_sc00781.1.g00010.1.am.mk 227 ETHSLTEKRRRCRITERLRTLQQLVPGCDkvsetsfsstigfrdrqwernlqHELVFTSNHASTLEQTIRYMKWLQ 302 58*************************555*******************997666666999***********9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.16E-10 | 223 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.277 | 224 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 227 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-13 | 227 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-9 | 227 | 306 | No hit | No description |
SMART | SM00353 | 4.6E-9 | 230 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MQPHHGGRPP RPSYHGKLFR RWPAPPHRPI QSLLSKLQRL RDREPSHTTS PLSPAAILIF 60 IRRLSLSLTH PHQHHHHPPP PLPRSSPQPS DASAASEMNY PDETYGDLWC NPEVDIAGET 120 DADDANRLLP GMLSTSDNYY HNDGLFDLVW EGGDVVVEQA AVSGNSAPPP VHDEPDDKAA 180 LPPDRPSEHE MASWLAAIVR GDERDPSEKA AAGGATVTPA RRPHHGETHS LTEKRRRCRI 240 TERLRTLQQL VPGCDKVSET SFSSTIGFRD RQWERNLQHE LVFTSNHAST LEQTIRYMKW 300 LQHQVQAVPV VAAPPLRPPA AVYSVAQPPA GVAPMVLGPV PMVPLVRPLL PYAHYPAGPA 360 PAVLVPVAAA PPPPLYPAPA STALATPGPG PSGAANRRHG SSVRKLKEEQ K |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |