PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00780.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 98aa MW: 11281.5 Da PI: 11.7718 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.1 | 2.6e-29 | 31 | 81 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g++KKA+ELS+LCdaev +++fs+tg+lye++s Zmw_sc00780.1.g00010.1.am.mk 31 KRIENSTSRQVTFSKRRGGLFKKAKELSILCDAEVGLVVFSNTGRLYEFAS 81 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.27E-29 | 23 | 84 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.8E-40 | 23 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.043 | 23 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.48E-38 | 24 | 84 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 25 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 25 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-27 | 32 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 45 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 60 | 81 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 98 aa Download sequence Send to blast |
MRTCLVLIRR EQQVARIWVG KKMGRGKIVI KRIENSTSRQ VTFSKRRGGL FKKAKELSIL 60 CDAEVGLVVF SNTGRLYEFA STRFVWLVPV RLLAKIDL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-19 | 23 | 82 | 1 | 60 | MEF2C |
5f28_B | 7e-19 | 23 | 82 | 1 | 60 | MEF2C |
5f28_C | 7e-19 | 23 | 82 | 1 | 60 | MEF2C |
5f28_D | 7e-19 | 23 | 82 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019420955.1 | 1e-31 | PREDICTED: MADS-box transcription factor 23-like isoform X2 | ||||
Refseq | XP_025878665.1 | 6e-32 | MADS-box transcription factor 57 isoform X3 | ||||
Swissprot | Q6Z6W2 | 5e-32 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A314Z6Q3 | 2e-32 | A0A314Z6Q3_PRUYE; MADS-box protein 12 | ||||
STRING | GRMZM2G052045_P01 | 8e-33 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Publications ? help Back to Top | |||
---|---|---|---|
|