PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00769.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 241aa MW: 26238.2 Da PI: 7.3624 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.7e-10 | 71 | 97 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f +G+C y + C+FaHg+ Zmw_sc00769.1.g00180.1.am.mk 71 YKTRLCERFESGGWCAYEEACTFAHGR 97 9************************96 PP | |||||||
2 | zf-CCCH | 24 | 6.8e-08 | 142 | 160 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+ GtC+yGd+C++aHg Zmw_sc00769.1.g00180.1.am.mk 142 EFRDKGTCSYGDKCNYAHG 160 57778*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-15 | 67 | 103 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-9 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0067 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-8 | 71 | 97 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-7 | 138 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 139 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 140 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MENESNATAS GNAGHNSSWE GSSVIVLPAE SAAACPKSQQ QCGATRPQQR EKEQQQQPRA 60 ELVPEPPKVF YKTRLCERFE SGGWCAYEEA CTFAHGRAEL RPPLPLPPTF RRSRPAPPPP 120 ADADDSWRAR FLYVGAGKVC FEFRDKGTCS YGDKCNYAHG TAVQPTDTVY HTGPDPARKS 180 ATSPARAFSP GSSIYAPATS RAFPPGHDVV DGPQGEVKPT PLELLSRKKL SGIYGDWPED 240 F |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5VJ66 | 3e-42 | A0A1E5VJ66_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00381.1.p | 9e-41 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |