PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00767.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 37285.4 Da PI: 5.9429 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.6e-18 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Zmw_sc00767.1.g00050.1.am.mk 92 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 141 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 92 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 92 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 92 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-12 | 92 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 92 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-29 | 93 | 151 | No hit | No description |
PRINTS | PR00367 | 2.1E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MVQELQETSS SSSATTSSCT ASSTASCSST VTDSSSSPAS PAEANATPAP RKRQAAEAEA 60 EAGGEDEEEE EGCAVKAMAK KRKRSSEGKH PTYRGVRMRA WGKWVSEIRE PRKKSRIWLG 120 TFPTAEMAAR AHDVAALAIK GRAAHLNFPD LAGVLPHAAS AAPKDVQAAA ALAAAFTTDP 180 ETAATTAPCH PQQEPANNNA AAQVDSAAEE TLPAPPPAAS PLATPSSSSV VEDERQLFDL 240 PDLLPDIRDG FGCFPAMWAP LPDVEEVNAE LRLEEPLLWD SAAALEGSFS GDAQMPMRCY 300 SSDGARGYFK RGHRSRSQQN AAYCHGGATV RGRGPRCASL AAPRRSVTSR TALAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 90 | 149 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 84 | KKRKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274158.1 | 3e-83 | uncharacterized protein LOC101781338 | ||||
Swissprot | Q8LBQ7 | 3e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1E5V3V5 | 3e-89 | A0A1E5V3V5_9POAL; Ethylene-responsive transcription factor ERF034 | ||||
STRING | OPUNC10G16830.1 | 1e-85 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Publications ? help Back to Top | |||
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