PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00763.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 749aa MW: 83936.9 Da PI: 4.9856

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00763.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	601	651	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Zmw_sc00763.1.g00200.1.sm.mkhc 601 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 651 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.631	590	671	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	603	651	IPR003035	RWP-RK domain
PROSITE profile	PS51745	15.551	643	728	IPR000270	PB1 domain
SMART	SM00666	4.7E-7	646	728	IPR000270	PB1 domain
Pfam	PF00564	7.0E-11	661	719	IPR000270	PB1 domain
SuperFamily	SSF54277	3.6E-14	661	718	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-14	664	719	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MEQKEEDGFL GCGTRMEEEI VVGDMDLMEE LFLAAPGFDF SDFPNPGAGA SPAAAAAFSP 60 LFDICSTTTT ATPPPAQAGE DDREEPAEKA DREGANTPLR PWLFQPRQQE VEATVKERLR 120 RALERIASLS QSQPGELLAQ VWVPMVIGDR QVLTTCGQPF WLDRRNERLA SYRTVSMKYQ 180 FSADESSRAE LGLPGRVFVG RVPEWTPDVR YFSTEEYPRV RHAKHFDIRG SVALPIFEPR 240 TRACLGVVEL VMTTQKINYN AEIENICSAL KEVDLRSTDG SSDPFAKVVD TSYRAILPEI 300 ADVLRTVCER HKLPLAQAWI PCISQAKRGS RHSDEKFCVS TVDEACYVQD PDVRGFHEAC 360 SEHHLFREGV VGRAFGTNEP CFCPDITAYS KVEYPLSHHA KLFNLRAAVA IRLRSVGTGS 420 LDFVLEFFLP VDCVTDEEQR AMLNSLFVTI QQTCCTLRAV SLKELVDEGS IETNLPTQQE 480 FYDNSMHENL GELCSGVDVP ARTTSLENSE VSSWIASLVD AQNKGVKEID GDLPFGFTKH 540 EDEGFSVTAG WNTSPVLGPE DSIFSGFKHH EEYEVKEANC SSPPNTLNLE KTVEKRRTKT 600 EKTVSLEELR KHFAGSLKEA AKNLGVCPTT LKRICRQHGI NRWPSRKIKK VGHSLKKLEM 660 VIDSPSWGFD KLKEEILRRF SIAKENYVDL KYLDDESEWV LLTCDADLLE CIDVYKSSSV 720 QTGTCDVGLI KHVKIKFIMA TFDQASQNQ

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MEQKEEDGFL GCGTRMEEEI VVGDMDLMEE LFLAAPGFDF SDFPNPGAGA SPAAAAAFSP  60
LFDICSTTTT ATPPPAQAGE DDREEPAEKA DREGANTPLR PWLFQPRQQE VEATVKERLR  120
RALERIASLS QSQPGELLAQ VWVPMVIGDR QVLTTCGQPF WLDRRNERLA SYRTVSMKYQ  180
FSADESSRAE LGLPGRVFVG RVPEWTPDVR YFSTEEYPRV RHAKHFDIRG SVALPIFEPR  240
TRACLGVVEL VMTTQKINYN AEIENICSAL KEVDLRSTDG SSDPFAKVVD TSYRAILPEI  300
ADVLRTVCER HKLPLAQAWI PCISQAKRGS RHSDEKFCVS TVDEACYVQD PDVRGFHEAC  360
SEHHLFREGV VGRAFGTNEP CFCPDITAYS KVEYPLSHHA KLFNLRAAVA IRLRSVGTGS  420
LDFVLEFFLP VDCVTDEEQR AMLNSLFVTI QQTCCTLRAV SLKELVDEGS IETNLPTQQE  480
FYDNSMHENL GELCSGVDVP ARTTSLENSE VSSWIASLVD AQNKGVKEID GDLPFGFTKH  540
EDEGFSVTAG WNTSPVLGPE DSIFSGFKHH EEYEVKEANC SSPPNTLNLE KTVEKRRTKT  600
EKTVSLEELR KHFAGSLKEA AKNLGVCPTT LKRICRQHGI NRWPSRKIKK VGHSLKKLEM  660
VIDSPSWGFD KLKEEILRRF SIAKENYVDL KYLDDESEWV LLTCDADLLE CIDVYKSSSV  720
QTGTCDVGLI KHVKIKFIMA TFDQASQNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698190.1	0.0	protein NLP1 isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A2T7CI59	0.0	A0A2T7CI59_9POAL; Uncharacterized protein
STRING	Si034133m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]