PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00743.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 498aa MW: 56524.7 Da PI: 9.6186 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.1 | 4.2e-10 | 267 | 350 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 l ++k++a ++ ++es+++tl+ + + W + y rk ++ ++ + W +Fv++n+++egD+++++ +++ ++ + Zmw_sc00743.1.g00200.1.am.mkhc 267 LGISKEYAFAYF--PHESTKITLQMPGMdKMWHPLF-YkRKENRKNFIMGRWMDFVRDNNVQEGDICLLEPVKEdRRST 342 567788887775..5578899999988757777777.5255555578888********************876658888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++v ++r+ Zmw_sc00743.1.g00200.1.am.mkhc 343 FTVYLLRT 350 89888876 PP | |||||||
2 | B3 | 46.8 | 5.2e-15 | 418 | 493 | 19 | 97 |
-HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 19 pkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++a+e+ + ++t ++ ++ g++W+ ++ + +++++ +l +GW +F+++ngL+++D+++F+l+++ ++ +++v+ Zmw_sc00743.1.g00200.1.am.mkhc 418 GVRYAAEYlP---AVGQT-VVLQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLRVRDVCLFELMENeRNITMNVH 491 5566666632...22334.55677*********77777766.6999**********************98788888888 PP EE CS B3 96 vf 97 ++ Zmw_sc00743.1.g00200.1.am.mkhc 492 II 493 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-16 | 245 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 245 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.0E-6 | 251 | 351 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.71E-16 | 251 | 349 | No hit | No description |
PROSITE profile | PS50863 | 10.659 | 252 | 351 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-8 | 267 | 350 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-6 | 400 | 496 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-18 | 408 | 493 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-16 | 413 | 493 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.95E-13 | 417 | 493 | No hit | No description |
Pfam | PF02362 | 3.0E-13 | 418 | 493 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.448 | 433 | 496 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MVKNEYLNKL LSSKVDTSQK KHFKRKPDME PVDNCSYKRR QIAINISNSK SLQSCETIGS 60 KTAKGNNGGN LHIENGSVTL NIRHPKPLIV QCLGDTNHSH ILKGIEGSSH QWKDPQPLRN 120 PFKSIVMKRK KVVLGSKKVE TSTSTADYEK PVHEKCGNTS GGMMNMCANM SSQNMVWTDR 180 SYHGGKTIRM ATCTALEESD VLAENRSLEL DNLHAVPRGD YILSRTSCLS EAQKERVMAF 240 IQKTKPQITV FVSVIGKSSV QPPGPYLGIS KEYAFAYFPH ESTKITLQMP GMDKMWHPLF 300 YKRKENRKNF IMGRWMDFVR DNNVQEGDIC LLEPVKEDRR STFTVYLLRT SAMHATDGDG 360 FLRAGPYPSE SIVKMASEVH VKGELSKGKH VSAERLMHES SHESPETSDT GDPIFEIGVR 420 YAAEYLPAVG QTVVLQRMGK TWNTQMVIHN GRRWFLNGGW TKFARDNGLR VRDVCLFELM 480 ENERNITMNV HIIFREEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797620.1 | 1e-116 | B3 domain-containing protein Os03g0619800-like isoform X3 | ||||
TrEMBL | A0A0A9EDT2 | 1e-123 | A0A0A9EDT2_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ia01276.1.p | 1e-103 | (Panicum virgatum) | ||||
STRING | Pavir.Ib03958.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |