PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00743.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 477aa MW: 52222.7 Da PI: 9.1688

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00743.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.9	5.5e-55	174	299	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yL++kv++ +++ ++i++vd++k+ePw+Lp+k++ +ekewyfFs rd+ky+tg r+nrat+sg Zmw_sc00743.1.g00090.1.am.mk 174 LPPGFRFHPTDEELVTYYLTHKVSDFAFTT-RAIADVDLNKCEPWELPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSG 253 79***********************999.89***********999999*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkdke+++ g lvg+kktLvfy+grapkg kt+Wvmheyrl Zmw_sc00743.1.g00090.1.am.mk 254 YWKTTGKDKEIFH-CGMLVGMKKTLVFYRGRAPKGGKTSWVMHEYRL 299 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-63	168	320	IPR003441	NAC domain
PROSITE profile	PS51005	59.459	174	320	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	175	299	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MLPSSGRSEL SIGSPLTGFW SNNEDSATRG FSWLELAGNP SLHRGVNLKR RIDASSSLLS 60 TSPSPSPVIL AVVFGPRLKT KRIGQKEEER AARAGLVVYY CVALTSLHAR THAVRALVQL 120 LAFFRFRVFL CHYICAIAGG TVAATPAVAA DCALTHSLHA GRALRPRVVM EEGLPPGFRF 180 HPTDEELVTY YLTHKVSDFA FTTRAIADVD LNKCEPWELP SKASMGEKEW YFFSMRDRKY 240 PTGIRTNRAT DSGYWKTTGK DKEIFHCGML VGMKKTLVFY RGRAPKGGKT SWVMHEYRLQ 300 NKFPYKPNKE EWVVCRVFKK CQIIKVRPPT DSPTMDSPYH DGNASLGELD VSSILSNLTP 360 ASVHTSSSAP GEGFGHRVDM NAYMSWMAAA NQGAAAAAMI PWAMAPGLLG NVFAAPNQPY 420 AGCSPSQPRE IGGVVANVGG GQAMFVSSVA KVDMECDQQH QPPPQQLGID DSTWGAF

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MLPSSGRSEL SIGSPLTGFW SNNEDSATRG FSWLELAGNP SLHRGVNLKR RIDASSSLLS  60
TSPSPSPVIL AVVFGPRLKT KRIGQKEEER AARAGLVVYY CVALTSLHAR THAVRALVQL  120
LAFFRFRVFL CHYICAIAGG TVAATPAVAA DCALTHSLHA GRALRPRVVM EEGLPPGFRF  180
HPTDEELVTY YLTHKVSDFA FTTRAIADVD LNKCEPWELP SKASMGEKEW YFFSMRDRKY  240
PTGIRTNRAT DSGYWKTTGK DKEIFHCGML VGMKKTLVFY RGRAPKGGKT SWVMHEYRLQ  300
NKFPYKPNKE EWVVCRVFKK CQIIKVRPPT DSPTMDSPYH DGNASLGELD VSSILSNLTP  360
ASVHTSSSAP GEGFGHRVDM NAYMSWMAAA NQGAAAAAMI PWAMAPGLLG NVFAAPNQPY  420
AGCSPSQPRE IGGVVANVGG GQAMFVSSVA KVDMECDQQH QPPPQQLGID DSTWGAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	174	320	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	174	320	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	174	320	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	174	320	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	174	320	20	168	NAC domain-containing protein 19
3swm_B	2e-54	174	320	20	168	NAC domain-containing protein 19
3swm_C	2e-54	174	320	20	168	NAC domain-containing protein 19
3swm_D	2e-54	174	320	20	168	NAC domain-containing protein 19
3swp_A	2e-54	174	320	20	168	NAC domain-containing protein 19
3swp_B	2e-54	174	320	20	168	NAC domain-containing protein 19
3swp_C	2e-54	174	320	20	168	NAC domain-containing protein 19
3swp_D	2e-54	174	320	20	168	NAC domain-containing protein 19
4dul_A	2e-54	174	320	17	165	NAC domain-containing protein 19
4dul_B	2e-54	174	320	17	165	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795943.1	1e-164	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A1E5WJW1	1e-175	A0A1E5WJW1_9POAL; Protein CUP-SHAPED COTYLEDON 2
STRING	Pavir.Ib03976.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50