PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00743.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 536aa MW: 61365.5 Da PI: 7.9063 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.9 | 1.2e-10 | 130 | 178 | 42 | 92 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +g+ W+v++ + ++r+ l kGWk+F+ +n+L+ g++++F+ ++++ ++ Zmw_sc00743.1.g00060.1.sm.mk 130 NGKNWKVRC--VRVDKRVRLWKGWKGFAADNNLQLGEICLFEILKDKQYTM 178 69*******..999999*************************777666644 PP | |||||||
2 | B3 | 57.1 | 3.2e-18 | 221 | 307 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 s v ++ +l+lp +fa++++g s +tl+++sg++W++++ + ++++v+++GW+eFv +++++egD ++Fk++g s Zmw_sc00743.1.g00060.1.sm.mk 221 SIVRNQLNLSLPSRFANNFNGH--ISEVVTLKSPSGKTWSIRV-GSDDGDEVVFRSGWNEFVGEQRVEEGDCLLFKYTGAS 298 556666679*******888666..6779***************.3444455***************************999 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 f v vf++ Zmw_sc00743.1.g00060.1.sm.mk 299 AF--DVLVFDA 307 99..8888876 PP | |||||||
3 | B3 | 43 | 8.3e-14 | 428 | 527 | 1 | 99 |
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f++v+ ps+v + g+++l+ +fa++++g ++++l+ +sg W ++i ++ ++ + ++GW +F ++ng+ e+D Zmw_sc00743.1.g00060.1.sm.mk 428 FVQVMHPSHVRGKkrGIVILSAEFATKFMGT--LRREIILRRSSGgGAWHARYICNRFARG-LCGRGWCSFTEDNGVVERD 505 6777878887655448899*********887..5568999996655*******86666655.7999*************** PP EEEEEE-SS.SEE..EEEEE-S CS B3 79 fvvFkldgr.sefelvvkvfrk 99 +++F++++ ++ +++v+v+rk Zmw_sc00743.1.g00060.1.sm.mk 506 VCLFEVMQGaRRPTMTVHVLRK 527 *****9977799999**99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-4 | 21 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.094 | 27 | 184 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-14 | 105 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-13 | 123 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 130 | 184 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.25E-8 | 130 | 169 | No hit | No description |
Pfam | PF02362 | 6.9E-8 | 130 | 178 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-23 | 204 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-21 | 207 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-18 | 208 | 306 | No hit | No description |
PROSITE profile | PS50863 | 14.607 | 214 | 308 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-10 | 218 | 308 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 219 | 306 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.35E-16 | 422 | 526 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-18 | 422 | 526 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.23E-9 | 426 | 523 | No hit | No description |
SMART | SM01019 | 0.0042 | 428 | 528 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-11 | 428 | 527 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.093 | 445 | 528 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MNTDHERCTE RAGFSFWSDT NDRDKHFFKI MAAGFRERLT IPHNFVQNFL GKLPRTVEIE 60 PRNGSTFNVQ LIDEMEDTAL SEDDQRAHFN PTTMKKKLKE KVRAIHSEIP VYVCVIKKSN 120 IYGTARCMCN GKNWKVRCVR VDKRVRLWKG WKGFAADNNL QLGEICLFEI LKDKQYTMNI 180 MKNLDKKCRV CVEWQEHCYW SHMADEEKHF FKVVAGDFTE SIVRNQLNLS LPSRFANNFN 240 GHISEVVTLK SPSGKTWSIR VGSDDGDEVV FRSGWNEFVG EQRVEEGDCL LFKYTGASAF 300 DVLVFDASGY EKKTPPCVSQ IRGYQQEEDG GDAQLEREAA VHKNTGRSNA STTNLPDEQD 360 GWGWRACEVK EEDEDDVEIL DGDGGAPATA AGYYFGNFGP VSEYRLTEED REQIWSVRVP 420 VRPRNPVFVQ VMHPSHVRGK KRGIVILSAE FATKFMGTLR REIILRRSSG GGAWHARYIC 480 NRFARGLCGR GWCSFTEDNG VVERDVCLFE VMQGARRPTM TVHVLRKVRG RYVPLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982409.2 | 1e-136 | B3 domain-containing protein Os03g0622200 | ||||
Swissprot | Q10GM3 | 1e-101 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A1E5WJT8 | 1e-144 | A0A1E5WJT8_9POAL; B3 domain-containing protein | ||||
TrEMBL | A0A3L6S3P6 | 1e-143 | A0A3L6S3P6_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Ib03973.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Publications ? help Back to Top | |||
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