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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00731.1.g00300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 209aa MW: 22438.9 Da PI: 8.5821 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 5.9e-41 | 36 | 112 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dl+ akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Zmw_sc00731.1.g00300.1.sm.mkhc 36 CQVEGCGLDLTGAKEYHRKHRVCEAHTKCPRVVVAGHERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 112 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.2E-33 | 29 | 97 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.24 | 33 | 110 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-39 | 34 | 115 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-31 | 36 | 109 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MPASGSSGEA PARRGGRERE GKRAKGEDGG AGEVKCQVEG CGLDLTGAKE YHRKHRVCEA 60 HTKCPRVVVA GHERRFCQQC SRFHALSEFD QKKRSCRRRL SDHNARRRKP QPDAFAFASA 120 RLPSSLFGPD TSITASKFDG APDLQHALSL LSAGSCGFPD PVQQASCLIQ FSGTSENSGD 180 LHSSHGGSSA LVSCADEQHT APQSQLSYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 26 | 109 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 108 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688371.1 | 1e-82 | PREDICTED: squamosa promoter-binding-like protein 4 isoform X2 | ||||
Swissprot | Q6H509 | 2e-53 | SPL4_ORYSJ; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | C4JBI6 | 2e-74 | C4JBI6_MAIZE; Squamosa promoter-binding-like protein 2 | ||||
STRING | GRMZM2G163813_P02 | 3e-75 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Publications ? help Back to Top | |||
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