PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00727.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 650aa MW: 70011.7 Da PI: 10.3793

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00727.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.4	3.2e-12	364	463	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikege 68 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + Zmw_sc00727.1.g00110.1.am.mk 364 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWIDIASEVsaycaedtaatgkPGGNSAKTPNQCKNKIESMKKRYRAESAAV 444 5****************************99999999999***966666799*************998766 PP trihelix 69 kkr.tsessstcpyfdqle 86 + + + ++++f +++ Zmw_sc00727.1.g00110.1.am.mk 445 ARAgPAAAGPSWRFFARMD 463 66536778889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-13	362	464	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MEELDCMTWV PLSLDLSTFL ILSFAQLRSS KFRCHSSSTS GNNLSWFAGT CVGFTSVGTS 60 KSDRIAYTAT FLIEQDAFLP VLPQMVTVNR CSRDPRTFRG VISMPAGDGE KDAGCHQPRA 120 SGSRKRGRHQ PRAVRRLPRA AAALLAVENE ARPRARGRAP RPPLPPSAVV ELPSTALPAA 180 PDAKNPPLIR ANAKNPPLIR ARQKNSSLSA DGRTDAFPTA AASSRCAPRA GRGRAELPAP 240 VSPPLCAAPG CPVPTTSSSR PLFLHGSRFP LTANSTSAQP FFRAFGSSVR SRSAQPLLAL 300 SLFSRPRLLL TPLARRPLSF AVLRSLPSPA AEFDHFLGSG SMDGLAPDAD AAPLAAAPPQ 360 KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWIDIASE VSAYCAEDTA ATGKPGGNSA 420 KTPNQCKNKI ESMKKRYRAE SAAVARAGPA AAGPSWRFFA RMDGLLKGPA GCSGQAQQAP 480 AKAELPDPGP GAFADLMNID ANGSVPEKAD KADNSVHKEI RTADSDANVS SPRSKVANED 540 ADEEDKLWDM PKKRKSTEFA IAKSIELLAS SFLKVEHARM EMYRETERMR IEAEIKKGEM 600 ELKRTEIMAK THLQIAKLFA KRLKEGGGRT GGSSSVTAEV DTLTKKGEND

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MEELDCMTWV PLSLDLSTFL ILSFAQLRSS KFRCHSSSTS GNNLSWFAGT CVGFTSVGTS  60
KSDRIAYTAT FLIEQDAFLP VLPQMVTVNR CSRDPRTFRG VISMPAGDGE KDAGCHQPRA  120
SGSRKRGRHQ PRAVRRLPRA AAALLAVENE ARPRARGRAP RPPLPPSAVV ELPSTALPAA  180
PDAKNPPLIR ANAKNPPLIR ARQKNSSLSA DGRTDAFPTA AASSRCAPRA GRGRAELPAP  240
VSPPLCAAPG CPVPTTSSSR PLFLHGSRFP LTANSTSAQP FFRAFGSSVR SRSAQPLLAL  300
SLFSRPRLLL TPLARRPLSF AVLRSLPSPA AEFDHFLGSG SMDGLAPDAD AAPLAAAPPQ  360
KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWIDIASE VSAYCAEDTA ATGKPGGNSA  420
KTPNQCKNKI ESMKKRYRAE SAAVARAGPA AAGPSWRFFA RMDGLLKGPA GCSGQAQQAP  480
AKAELPDPGP GAFADLMNID ANGSVPEKAD KADNSVHKEI RTADSDANVS SPRSKVANED  540
ADEEDKLWDM PKKRKSTEFA IAKSIELLAS SFLKVEHARM EMYRETERMR IEAEIKKGEM  600
ELKRTEIMAK THLQIAKLFA KRLKEGGGRT GGSSSVTAEV DTLTKKGEND

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46