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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00723.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 923aa MW: 101302 Da PI: 8.5925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.7e-52 | 18 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknr 76 lppGfrFhPtdeelv +yL++k+ +++ + vi++vd++k+ePw+Lp k k+k +ekewyfF+++d+ky+tg r+nr Zmw_sc00723.1.g00180.1.am.mk 18 LPPGFRFHPTDEELVIQYLARKALNSRYTS-PVIADVDLLKWEPWHLPgKqsarKAKMGEKEWYFFCRKDRKYPTGMRTNR 97 79*************************888.89**************96467776677999******************** PP NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 at+sgyWkatg+dkev++ +g l g+kktLvf+ grap+g+kt Wvmheyrle Zmw_sc00723.1.g00180.1.am.mk 98 ATASGYWKATGRDKEVFRGSGVLAGMKKTLVFHLGRAPRGKKTAWVMHEYRLE 150 ******************99*******************************85 PP | |||||||
2 | NAM | 157 | 7.9e-49 | 435 | 585 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvkaeeke 57 +p+GfrFhPtdeelv++yL +kv + +++ vi++vd++k+ePw+Lp k+k +eke Zmw_sc00723.1.g00180.1.am.mk 435 MPAGFRFHPTDEELVSHYLIRKVLNCLFTC-LVIADVDLNKWEPWELPGnclelksisgmrpggravlvvgagKAKMGEKE 514 699************************999.78***************5599****************99998778899** PP NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 wyfF ++ +ky+tg r+nrat+sgyWkatg+dke+++ +g lvg+kktLvf+ grap+g+kt Wvmheyrle Zmw_sc00723.1.g00180.1.am.mk 515 WYFFWHKGRKYPTGMRTNRATASGYWKATGRDKEIFR-GGVLVGMKKTLVFHLGRAPRGKKTAWVMHEYRLE 585 *************************************.********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-59 | 15 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 18 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 19 | 149 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-55 | 429 | 608 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.959 | 435 | 608 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 436 | 584 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 923 aa Download sequence Send to blast |
MSEVPANNSQ GEEQLLELPP GFRFHPTDEE LVIQYLARKA LNSRYTSPVI ADVDLLKWEP 60 WHLPGKQSAR KAKMGEKEWY FFCRKDRKYP TGMRTNRATA SGYWKATGRD KEVFRGSGVL 120 AGMKKTLVFH LGRAPRGKKT AWVMHEYRLE GELPPSLPAG AKDEWAVCRV FNKDLSAKPG 180 LLQQTASTSS APAAAGTMDS NDSLFFLDDP TELMAMPPLV DPAPFPDDLV GLKGATAGAS 240 SSGYRQQVKT QEQPAAQNAP PLQLQEDPYS YLAQPPPGEA GADGVRSLED DLLWPDGVTD 300 YSDMWKRITL LLDRPVLQIS RPCWLHVDAE AGHHIVAVSS YADHYSSSFV NHDTDSSQHR 360 APSPARFLRP PPNPIPSPSP FTLVPSSLSP SPPAGSAGAH RRSAEHLAAM SEVSAINSQG 420 GEVEEEEEQQ QQLVMPAGFR FHPTDEELVS HYLIRKVLNC LFTCLVIADV DLNKWEPWEL 480 PGNCLELKSI SGMRPGGRAV LVVGAGKAKM GEKEWYFFWH KGRKYPTGMR TNRATASGYW 540 KATGRDKEIF RGGVLVGMKK TLVFHLGRAP RGKKTAWVMH EYRLEGKLPP NLTPAAKDEW 600 AVCRVFNKDL AAKPGQNPAS SSAAPAAGTM ERPGSPFFLD DLLNHTEMPP PLVDADPPFP 660 DDLIDLQGGA TAGTSSSGYL QQVKTEQPAA LQNTPRLQLQ EDPYHSYFGE AGAGSVRPLE 720 DDLWPDGVTD YSNITPVRVG CVWMSPRRSR TQRRRASKPF AAVQQWMQRG GDDHLRGIKD 780 WTGSYNVGLP SVHGFTCWAR KCIWAVEDRR PKNAPLRAGL LQPTPVSRAV LAQPTRPPHS 840 GVRVSPSAAS IQIRASPVGS LRPCPSDCTT PGLFPFLRAA ERHPMGGDCK QAKRLPSISF 900 SRRTPPASAC TSAINADSPA LLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-50 | 16 | 613 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-50 | 16 | 613 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-50 | 16 | 613 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-50 | 16 | 613 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 16 | 613 | 10 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-50 | 16 | 613 | 7 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-50 | 16 | 613 | 7 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461233.1 | 4e-90 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 2e-74 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0A9IAM4 | 2e-97 | A0A0A9IAM4_ARUDO; Uncharacterized protein | ||||
STRING | Sb02g043270.1 | 2e-89 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP70911 | 2 | 2 |
Publications ? help Back to Top | |||
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