PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00718.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 477aa    MW: 50593.1 Da    PI: 6.5456
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00718.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.51.8e-881204762374
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   v++L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +p ++++++++ +l 
  Zmw_sc00718.1.g00270.1.sm.mk 120 VDQLAEAAKLAEAGDAFGAREILARLNYRfpaAPAAGTPLLRSAFYFKEALRLALSP----TGEAPAPPASTPYDVVLKLG 196
                                   689*************************999455566******************99....888889999999******** PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                   a+k+fsevsP+l+f+hlt+ qa+l+++ g++++H++Dfd+++G QW++L+q+La+R +++  l++T+++sp+s++  el+ 
  Zmw_sc00718.1.g00270.1.sm.mk 197 AYKAFSEVSPVLQFAHLTCVQAVLDELGGATCIHVLDFDVGMGEQWASLMQELAQR-RPATALKVTALVSPASHHPLELQL 276
                                   *******************************************************9.7889******************** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                   ++e+L++fA+elgv f+f+v    ++++l++ eL ++ + +++aV+l +   ++         + +++L+lvk+l +kvvv
  Zmw_sc00718.1.g00270.1.sm.mk 277 IHENLSSFAHELGVLFQFDVY---NVDTLDPAELvAIASCDTVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVV 346
                                   *******************95...889999999846677***********99998........4566************** PP

                          GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                    v++ +d+++ +F++++++ ++ +++l++sl+a  ++++e+++k+Er+l+++ +++ v  ++++      +   Wr  +++
  Zmw_sc00718.1.g00270.1.sm.mk 347 SVDHGCDRTELPFAAHLFQVFQSCVSLLESLDAV-GTDAETAAKIERFLVQPGVEQRVVGRHRA---GVDKPLPWRTVFTS 423
                                   *******************************998.8999*******************988887...7777889******* PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   aGF pvp s++a++qa++ll+kv+  g+rve++ g+l+l+W++ +LvsvSaWr
  Zmw_sc00718.1.g00270.1.sm.mk 424 AGFVPVPASSFAESQAESLLKKVALMGFRVESRGGALCLYWQRGELVSVSAWR 476
                                   ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.07593456IPR005202Transcription factor GRAS
PfamPF035146.2E-86120476IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDPPVLELDH APSMVSSSFG PNLAFAPAME DTKPAPSFGH APNFLLHHHQ HHPQPHAAFF  60
GSHPSFDAAA VPKRGHPMAG APAPKLPPFP GVVGPPAGGF VPALKPKAEA ANDEAAAAAV  120
DQLAEAAKLA EAGDAFGARE ILARLNYRFP AAPAAGTPLL RSAFYFKEAL RLALSPTGEA  180
PAPPASTPYD VVLKLGAYKA FSEVSPVLQF AHLTCVQAVL DELGGATCIH VLDFDVGMGE  240
QWASLMQELA QRRPATALKV TALVSPASHH PLELQLIHEN LSSFAHELGV LFQFDVYNVD  300
TLDPAELVAI ASCDTVAVHL PVGSAHVAAM PAILRLVKRL GAKVVVSVDH GCDRTELPFA  360
AHLFQVFQSC VSLLESLDAV GTDAETAAKI ERFLVQPGVE QRVVGRHRAG VDKPLPWRTV  420
FTSAGFVPVP ASSFAESQAE SLLKKVALMG FRVESRGGAL CLYWQRGELV SVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3015147632375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983723.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A1E5VUT00.0A0A1E5VUT0_9POAL; Scarecrow-like protein 6
STRINGSb01g029650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954