PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00715.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 393aa MW: 43039.1 Da PI: 10.6423 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.9e-18 | 97 | 145 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd + + kr +lg+f+taeeAa+ ++ a+ +l+g Zmw_sc00715.1.g00090.1.am.mk 97 FRGVRLRP-WGKYAAEIRDpW-----QrKRLWLGTFDTAEEAAAVYDDAAVRLKG 145 8*******.**********77.....44***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.944 | 96 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-34 | 96 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-28 | 97 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-9 | 97 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 97 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 97 | 155 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.42E-17 | 97 | 155 | No hit | No description |
PRINTS | PR00367 | 4.0E-9 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MSSPSDSSAA GRSRRVSLPL PHPKRVRVSF VDADATDTDS SGDEDERGNR RVREVIEIDV 60 QAASVPAKRS RRALPPHVVL ARRHRAKAAG AGLRRPFRGV RLRPWGKYAA EIRDPWQRKR 120 LWLGTFDTAE EAAAVYDDAA VRLKGSNAVT NFPSSVAAAE APARSSRKER RPRGGLVRDA 180 ASEAHPSPQP PSPPQPQART GEAVPVRELA SPTSVLRYAD EVALPAFDFF YGGFGELAAA 240 APSKAAEFEW MPWWEGEEFR RHREMTGVPL PSPPPYRPLP EEQGARDAWV GSTCQAAAWR 300 APSARPCACH ADEVNRKHHR TGSDLSSRHV SSDPGSDVSC FAWQGATLVH FNTWRNRSGP 360 QVRLGSRRCG RAGIGCADSG SALAFAPNRH RYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 97 | 160 | 6 | 70 | ATERF1 |
3gcc_A | 2e-18 | 97 | 160 | 6 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804895.1 | 1e-72 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2T7EG76 | 9e-73 | A0A2T7EG76_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6T1Q5 | 8e-73 | A0A3L6T1Q5_PANMI; Ethylene-responsive transcription factor CRF3-like | ||||
STRING | Pavir.Ia04256.1.p | 2e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13140 | 22 | 26 |