PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00714.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 38772.6 Da PI: 7.7729 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00087 | 246 | 268 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Zmw_sc00714.1.g00130.1.am.mk 246 HECSICGAEFASGQALGGHMRRH 268 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.28E-8 | 136 | 159 | No hit | No description |
Pfam | PF13912 | 3.7E-11 | 136 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.263 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.28E-8 | 241 | 268 | No hit | No description |
Pfam | PF13912 | 1.6E-12 | 245 | 269 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 246 | 268 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 246 | 273 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 248 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGGVRQEKEA AAPPTALVPA VVVKGKRSKR QRVHAPPLVL TAAAAEWSSS AASATAASAE 60 EDSGTSTPSA DDAASTNGCV TEEEEDMALC LVLLSRGEPA VAKEKVRKEG GEVAVVKEAR 120 FRSRRPADGA GAGEFVYECK TCNKCFPSFQ ALGGHRTSHK KPRLLPPVPP SSSDDKNSPA 180 AVETTTTTTA PSHPPSPPPA AQETPDATTA LLGNLPAVPA APLPKQEPGA TVSATASSGS 240 RHPRVHECSI CGAEFASGQA LGGHMRRHRP LVPAAARVDE APRKERSLLE LDLNMPAPCD 300 EAETSVTSPR FVFPVDAKRQ QAPPPLFPAT AAESGREGVW QLVRWGSGQR GNVLTNRDTL 360 SPVASPDLNR L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975056.3 | 1e-101 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A3L6PT03 | 1e-102 | A0A3L6PT03_PANMI; Zinc finger protein ZAT5-like | ||||
STRING | Pavir.J13454.1.p | 5e-97 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |